C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00077H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000028524-ENSDARG00000013695 CGP 7955 1:60230505-60279318
GeneTranscriptPositionBiotype
ENSDARG00000013695 (rdh8b)
retinol dehydrogenase 8b
ENSDART00000005116 (rdh8b-001) 60269731-60279318 protein_coding
ENSDARG00000028524 (col5a3b)
collagen, type V, alpha 3b
ENSDART00000014072 (col5a3b-201) 60230505-60263234 protein_coding
ENSDART00000152710 (col5a3b-001) 60235951-60263365 protein_coding
CIL_00077H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000080573-ENSG00000080511 CGP 9606 19:9959561-10022279
GeneTranscriptPositionBiotype
ENSG00000080511 (RDH8)
retinol dehydrogenase 8 (all-trans)
ENST00000587782 (RDH8-002) 10020761-10022070 protein_coding
ENST00000589570 (RDH8-003) 10017166-10021088 retained_intron
ENST00000591589 (RDH8-001) 10013249-10022279 protein_coding
ENSG00000080573 (COL5A3)
collagen, type V, alpha 3
ENST00000264828 (COL5A3-001) 9959561-10010471 protein_coding
ENST00000461214 (COL5A3-002) 9967573-9968887 retained_intron
CIL_00077H_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004098-ENSMUSG00000053773 CGP 10090 9:20770050-20826163
GeneTranscriptPositionBiotype
ENSMUSG00000004098 (Col5a3)
collagen, type V, alpha 3
ENSMUST00000004201 (Col5a3-001) 20770050-20815067 protein_coding
ENSMUST00000145974 (Col5a3-002) 20782794-20815067 retained_intron
ENSMUSG00000053773 (Rdh8)
retinol dehydrogenase 8
ENSMUST00000066387 (Rdh8-201) 20818504-20826163 protein_coding
ENSMUSG00000087728 (Gm26274)
predicted gene, 26274
ENSMUST00000157103 (Gm26274-201) 20807034-20807354 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00077H_0001ENSDARG00000013695ENSDART00000005116ENSDARG00000028524ENSDART00000014072ENSDART00000152710CIL_00077H_0002ENSG00000080511ENST00000587782ENST00000589570ENST00000591589ENSG00000080573ENST00000264828ENST00000461214CIL_00077H_0003ENSMUSG00000004098ENSMUST00000004201ENSMUST00000145974ENSMUSG00000053773ENSMUST00000066387ENSMUSG00000087728ENSMUST00000157103
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00077H_0001ENSDARG00000013695ENSDART00000005116ENSDARG00000028524ENSDART00000014072ENSDART00000152710CIL_00077H_0002ENSG00000080511ENST00000587782ENST00000589570ENST00000591589ENSG00000080573ENST00000264828CIL_00077H_0003ENSMUSG00000004098ENSMUST00000004201ENSMUST00000145974ENSMUSG00000053773ENSMUST00000066387ENSMUSG00000087728ENSMUST00000157103
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013695 ENSDART00000005116 N/A N/A N/A 2.404±0.95 N/A N/A 0.416±0.22 0.240±0.00 N/A N/A 0.186±0.00 N/A N/A N/A
ENSDARG00000028524 ENSDART00000014072 N/A N/A N/A 0.161±0.08 N/A N/A 0.076±0.00 0.033±0.00 0.005±0.00 N/A 0.034±0.00 N/A N/A N/A
ENSDART00000152710 N/A N/A N/A 0.091±0.00 N/A N/A 0.023±0.00 0.852±0.74 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080511 ENST00000587782 N/A N/A N/A N/A N/A N/A N/A 0.243±0.00 N/A N/A N/A 0.096±0.00 0.083±0.00 0.890±0.15
ENST00000589570 N/A 0.332±0.00 N/A 0.163±0.00 0.102±0.00 N/A N/A 0.748±0.00 0.090±0.00 N/A N/A 0.085±0.00 N/A 0.265±0.08
ENST00000591589 N/A 0.025±0.00 N/A N/A 0.138±0.00 N/A N/A 0.508±0.00 N/A N/A N/A 0.016±0.00 N/A 0.115±0.00
ENSG00000080573 ENST00000264828 8.220±0.00 2.963±0.00 0.243±0.00 0.822±0.00 29.122±0.00 2.393±1.79 2.161±0.00 0.433±0.37 0.639±0.30 2.120±1.66 0.623±0.48 2.567±1.95 16.815±3.98 2.928±0.54
ENST00000461214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004098 ENSMUST00000004201 79.552±61.08 44.439±8.12 5.677±0.22 0.410±0.36 31.934±4.13 5.100±0.62 5.028±0.49 1.022±0.38 0.843±0.91 1.902±0.35 4.717±1.21 4.610±2.04 1.323±0.57 0.276±0.10
ENSMUST00000145974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.355±0.00 N/A N/A
ENSMUSG00000053773 ENSMUST00000066387 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.072±0.00 N/A 0.019±0.00
ENSMUSG00000087728 ENSMUST00000157103 0.554±0.09 0.359±0.00 N/A N/A 0.555±0.05 0.377±0.00 0.193±0.00 N/A N/A N/A N/A 0.266±0.00 0.032±0.00 N/A

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