C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004G7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000080511-ENSG00000130813 CGP 9606 19:10013249-10093252
GeneTranscriptPositionBiotype
ENSG00000080511 (RDH8)
retinol dehydrogenase 8 (all-trans) 		ENST00000587782 (RDH8-002) 10020761-10022070 protein_coding
ENST00000589570 (RDH8-003) 10017166-10021088 retained_intron
ENST00000591589 (RDH8-001) 10013249-10022279 protein_coding
ENSG00000130812 (ANGPTL6)
angiopoietin-like 6 		ENST00000253109 (ANGPTL6-001) 10092341-10102796 protein_coding
ENST00000586910 (ANGPTL6-004) 10094521-10096131 retained_intron
ENST00000589181 (ANGPTL6-003) 10092338-10096598 protein_coding
ENST00000592641 (ANGPTL6-002) 10092339-10102659 protein_coding
ENSG00000130813 (C19orf66)
chromosome 19 open reading frame 66 		ENST00000253110 (C19orf66-001) 10086130-10093245 protein_coding
ENST00000397881 (C19orf66-004) 10086852-10093242 protein_coding
ENST00000585919 (C19orf66-003) 10086297-10093252 retained_intron
ENST00000586730 (C19orf66-005) 10091590-10093244 retained_intron
ENST00000586889 (C19orf66-009) 10087044-10089901 nonsense_mediated_decay
ENST00000587609 (C19orf66-007) 10089447-10090047 retained_intron
ENST00000587710 (C19orf66-008) 10086348-10091545 nonsense_mediated_decay
ENST00000590378 (C19orf66-010) 10086787-10089993 protein_coding
ENST00000591813 (C19orf66-002) 10086340-10092927 protein_coding
ENST00000592551 (C19orf66-006) 10086122-10088260 retained_intron
ENST00000593131 (C19orf66-011) 10089657-10092325 protein_coding
ENSG00000167798 (C3P1)
complement component 3 precursor pseudogene 		ENST00000495140 (C3P1-002) 10041841-10074135 processed_transcript
ENST00000497718 (C3P1-001) 10037803-10074135 transcribed_unprocessed_pseudogene
ENSG00000267387 (CTD-2240E14.4)
 ENST00000589622 (CTD-2240E14.4-001) 10089032-10090377 antisense
CIL_0004G7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053773-ENSMUSG00000038884 CGP 10090 9:20818504-20874307
GeneTranscriptPositionBiotype
ENSMUSG00000038742 (Angptl6)
angiopoietin-like 6 		ENSMUST00000043726 (Angptl6-001) 20873809-20879727 protein_coding
ENSMUSG00000038884 (A230050P20Rik)
RIKEN cDNA A230050P20 gene 		ENSMUST00000043911 (A230050P20Rik-001) 20868642-20874307 protein_coding
ENSMUST00000175820 (A230050P20Rik-002) 20868658-20874307 retained_intron
ENSMUST00000176142 (A230050P20Rik-004) 20868680-20870095 processed_transcript
ENSMUST00000176990 (A230050P20Rik-005) 20870772-20873121 retained_intron
ENSMUST00000177067 (A230050P20Rik-003) 20869277-20873771 retained_intron
ENSMUSG00000053773 (Rdh8)
retinol dehydrogenase 8 		ENSMUST00000066387 (Rdh8-201) 20818504-20826163 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004G7_0001ENSG00000080511ENST00000587782ENST00000589570ENST00000591589ENSG00000130812ENST00000253109ENST00000586910ENST00000589181ENST00000592641ENSG00000130813ENST00000253110ENST00000397881ENST00000585919ENST00000586730ENST00000586889ENST00000587609ENST00000587710ENST00000590378ENST00000591813ENST00000592551ENST00000593131ENSG00000167798ENST00000495140ENST00000497718ENSG00000267387ENST00000589622CIL_0004G7_0002ENSMUSG00000038742ENSMUST00000043726ENSMUSG00000038884ENSMUST00000043911ENSMUST00000175820ENSMUST00000176142ENSMUST00000176990ENSMUST00000177067ENSMUSG00000053773ENSMUST00000066387
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004G7_0001ENSG00000080511ENST00000587782ENST00000589570ENST00000591589ENSG00000130812ENST00000253109ENST00000589181ENST00000592641ENSG00000130813ENST00000253110ENST00000585919ENST00000586730ENST00000587710ENST00000592551ENST00000593131ENSG00000167798ENST00000495140ENST00000497718ENSG00000267387ENST00000589622CIL_0004G7_0002ENSMUSG00000038742ENSMUST00000043726ENSMUSG00000038884ENSMUST00000043911ENSMUST00000175820ENSMUST00000176142ENSMUST00000176990ENSMUST00000177067ENSMUSG00000053773ENSMUST00000066387
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080511 ENST00000587782 N/A N/A N/A N/A N/A N/A N/A 0.243±0.00 N/A N/A N/A 0.096±0.00 0.083±0.00 0.890±0.15
ENST00000589570 N/A 0.332±0.00 N/A 0.163±0.00 0.102±0.00 N/A N/A 0.748±0.00 0.090±0.00 N/A N/A 0.085±0.00 N/A 0.265±0.08
ENST00000591589 N/A 0.025±0.00 N/A N/A 0.138±0.00 N/A N/A 0.508±0.00 N/A N/A N/A 0.016±0.00 N/A 0.115±0.00
ENSG00000130812 ENST00000253109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.867±0.00 2.859±0.00
ENST00000586910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589181 5.001±0.00 12.752±0.00 N/A 6.476±4.00 3.037±1.57 5.454±0.00 1.184±0.92 8.588±0.00 38.636±0.00 12.484±0.00 N/A 8.740±5.95 6.227±0.00 8.059±0.00
ENST00000592641 N/A N/A N/A N/A N/A N/A N/A 3.557±0.00 N/A 0.510±0.00 0.540±0.00 N/A 3.177±0.00 N/A
ENSG00000130813 ENST00000253110 5.180±0.00 N/A 0.236±0.00 3.701±1.94 2.006±0.00 2.999±0.00 2.482±0.00 4.033±0.25 21.546±0.00 4.471±2.92 0.369±0.01 6.927±5.01 8.450±0.74 5.696±0.00
ENST00000397881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585919 N/A 12.121±0.00 0.697±0.00 3.445±2.69 2.258±1.58 2.404±1.71 0.427±0.18 3.791±0.00 9.042±8.20 9.240±0.00 N/A 6.067±4.15 2.904±0.61 2.338±0.50
ENST00000586730 N/A N/A N/A N/A N/A N/A N/A N/A 0.354±0.00 N/A 0.214±0.00 N/A N/A N/A
ENST00000586889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.892±0.00 N/A 2.552±0.00
ENST00000590378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.222±0.00 N/A 0.552±0.00
ENST00000593131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.906±0.00 N/A N/A N/A
ENSG00000167798 ENST00000495140 N/A 0.011±0.00 N/A 0.029±0.00 0.011±0.00 N/A N/A 2.582±2.55 4.685±4.67 0.135±0.00 N/A 0.167±0.08 0.013±0.00 0.019±0.00
ENST00000497718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00
ENSG00000267387 ENST00000589622 N/A 5.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.756±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038742 ENSMUST00000043726 4.083±0.00 N/A 7.117±1.34 5.780±4.64 6.826±0.67 3.336±0.55 3.132±0.54 2.398±0.31 16.377±5.63 N/A 3.183±0.88 5.283±0.89 9.314±7.18 0.548±0.16
ENSMUSG00000038884 ENSMUST00000043911 9.355±0.00 11.394±4.39 N/A N/A 9.419±1.59 3.184±1.19 1.547±0.00 2.091±0.66 6.220±2.67 7.343±1.02 0.550±0.00 10.552±1.61 N/A N/A
ENSMUST00000175820 4.554±2.52 12.565±3.96 9.926±2.46 2.234±2.06 10.434±3.06 5.307±1.16 1.603±0.28 1.913±1.03 9.368±6.09 10.473±0.76 0.713±0.18 12.247±3.38 2.685±1.51 0.570±0.19
ENSMUST00000176142 N/A N/A N/A 29.613±0.00 N/A N/A N/A N/A N/A N/A N/A 14.125±0.00 5.091±2.57 0.450±0.00
ENSMUST00000176990 8.987±4.99 N/A 8.481±0.00 N/A 17.286±7.38 N/A 2.395±0.60 3.850±0.00 10.116±0.00 N/A N/A 10.062±0.82 4.829±0.00 0.089±0.00
ENSMUST00000177067 7.606±2.22 18.197±3.48 9.682±2.94 21.522±0.00 12.869±4.21 6.827±0.67 1.808±0.00 3.407±1.21 17.591±7.84 12.094±1.71 N/A 21.353±3.64 4.225±1.79 0.454±0.13
ENSMUSG00000053773 ENSMUST00000066387 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.072±0.00 N/A 0.019±0.00

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