C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503004 CLDND1-006 ENSG00000080822 9606 - 3:98515483-98522514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungMuscleOvaryTestisENST00000503004
Transcript ID Bladder Brain Breast Heart Liver Lung Muscle Ovary Testis
ENST00000503004 2.776±0.00 49.419±0.00 6.716±0.00 1.563±0.00 5.770±0.00 7.802±0.00 0.592±0.00 7.354±0.00 6.379±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B3 CIL_0003B3_0001 CGP 3:98469480-98498663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162057 Cldn25-002 protein_coding Mus_musculus 0 948
ENSMUST00000023426 Cldn25-001 protein_coding Mus_musculus 0 865
ENSMUST00000162191 Cldn25-005 protein_coding Mus_musculus 0 521
ENSMUST00000159829 Cldn25-006 processed_transcript Mus_musculus 0 508
ENSMUST00000159944 Cldn25-003 nonsense_mediated_decay Mus_musculus 0 401
ENSMUST00000162249 Cldn25-004 retained_intron Mus_musculus 0 281

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