C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341181 CLDND1-001 ENSG00000080822 9606 - 3:98515473-98523043 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341181
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341181 14.602±0.00 10.854±0.00 83.196±23.22 14.229±0.37 20.146±14.62 8.929±3.89 10.213±3.51 13.007±6.91 21.805±13.51 3.602±2.88 14.472±5.00 12.555±2.72 33.275±12.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B3 CIL_0003B3_0001 CGP 3:98469480-98498663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023426 Cldn25-001 protein_coding Mus_musculus 0 1075
ENSMUST00000162057 Cldn25-002 protein_coding Mus_musculus 0 865
ENSMUST00000159829 Cldn25-006 processed_transcript Mus_musculus 0 438
ENSMUST00000162191 Cldn25-005 protein_coding Mus_musculus 0 411
ENSMUST00000159944 Cldn25-003 nonsense_mediated_decay Mus_musculus 0 401
ENSMUST00000162249 Cldn25-004 retained_intron Mus_musculus 0 281

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