C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: low density lipoprotein receptor-related protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000081479 LRP2 9606 - 2:169127109-169362685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263816 LRP2-001 169127109-169362685 protein_coding
  ENST00000443831 LRP2-005 169240750-169362534 protein_coding
  ENST00000461418 LRP2-003 169177840-169182450 processed_transcript
  ENST00000491228 LRP2-004 169132600-169139663 retained_intron
  ENST00000493501 LRP2-002 169271000-169275353 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000263816ENST00000443831ENST00000461418ENST00000491228
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000263816 0.004±0.00 50.490±0.00 1.845±0.50 N/A 0.066±0.00 1.273±1.26 0.016±0.00 1.673±0.00 0.028±0.02 3.052±1.49 0.131±0.00
ENST00000443831 N/A N/A 6.990±0.00 0.354±0.00 0.013±0.00 N/A 0.050±0.00 N/A 0.048±0.00 N/A N/A
ENST00000461418 N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A 0.158±0.00 N/A N/A
ENST00000491228 N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0001 VISTA 2:168815051-169417863
CIL_00063D CIL_00063D_0001 CGP 2:169064789-169362685
CIL_00063E CIL_00063E_0001 CGP 2:169127109-169506655

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005764 TAS lysosome
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005903 IEA brush border
GO:0005905 IEA coated pit
GO:0006486 TAS protein glycosylation
GO:0006629 TAS lipid metabolic process
GO:0006766 IEA vitamin metabolic process
GO:0006897 TAS endocytosis
GO:0006898 IEA receptor-mediated endocytosis
GO:0007603 TAS phototransduction, visible light
GO:0008202 TAS steroid metabolic process
GO:0008283 IEA cell proliferation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0017124 IEA SH3 domain binding
GO:0030139 IEA endocytic vesicle
GO:0030900 IEA forebrain development
GO:0031526 IEA brush border membrane
GO:0042359 TAS vitamin D metabolic process
GO:0043235 IDA receptor complex
GO:0044281 TAS small molecule metabolic process
GO:0045177 IEA apical part of cell
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060649 lrp2a low density lipoprotein receptor-related protein 2a protein_coding Danio_rerio
ENSMUSG00000027070 Lrp2 low density lipoprotein receptor-related protein 2 protein_coding Mus_musculus

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