C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263816 LRP2-001 ENSG00000081479 9606 - 2:169127109-169362685 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000263816
Transcript ID Adrenal Bladder Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000263816 0.004±0.00 50.490±0.00 1.845±0.50 0.066±0.00 1.273±1.26 0.016±0.00 1.673±0.00 0.028±0.02 3.052±1.49 0.131±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0001 VISTA 2:168815051-169417863
CIL_00063D CIL_00063D_0001 CGP 2:169064789-169362685
CIL_00063E CIL_00063E_0001 CGP 2:169127109-169506655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005764 TAS lysosome
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005903 IEA brush border
GO:0005905 IEA coated pit
GO:0006486 TAS protein glycosylation
GO:0006629 TAS lipid metabolic process
GO:0006766 IEA vitamin metabolic process
GO:0006897 TAS endocytosis
GO:0006898 IEA receptor-mediated endocytosis
GO:0007603 TAS phototransduction, visible light
GO:0008202 TAS steroid metabolic process
GO:0008283 IEA cell proliferation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0017124 IEA SH3 domain binding
GO:0030139 IEA endocytic vesicle
GO:0030900 IEA forebrain development
GO:0031526 IEA brush border membrane
GO:0042359 TAS vitamin D metabolic process
GO:0043235 IDA receptor complex
GO:0044281 TAS small molecule metabolic process
GO:0045177 IEA apical part of cell
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080953 Lrp2-001 protein_coding Mus_musculus 0 10760
ENSMUST00000100051 Lrp2-002 protein_coding Mus_musculus 0 2940
ENSMUST00000092551 Lrp2-003 protein_coding Mus_musculus 0 809
ENSDART00000085697 lrp2a-201 protein_coding Danio_rerio 0 383
ENSDART00000129237 lrp2a-001 protein_coding Danio_rerio 0 278

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