C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00063E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000081479-ENSG00000163093 CGP 9606 2:169127109-169506655
GeneTranscriptPositionBiotype
ENSG00000081479 (LRP2)
low density lipoprotein receptor-related protein 2
ENST00000263816 (LRP2-001) 169127109-169362685 protein_coding
ENST00000443831 (LRP2-005) 169240750-169362534 protein_coding
ENST00000461418 (LRP2-003) 169177840-169182450 processed_transcript
ENST00000491228 (LRP2-004) 169132600-169139663 retained_intron
ENST00000493501 (LRP2-002) 169271000-169275353 retained_intron
ENSG00000163093 (BBS5)
Bardet-Biedl syndrome 5
ENST00000295240 (BBS5-001) 169479178-169506655 protein_coding
ENST00000392663 (BBS5-002) 169479483-169506655 protein_coding
ENST00000443151 (BBS5-005) 169479502-169497655 nonsense_mediated_decay
ENST00000469980 (BBS5-004) 169479480-169482710 retained_intron
ENST00000472667 (BBS5-003) 169499034-169506490 retained_intron
ENST00000475571 (BBS5-006) 169487762-169493086 retained_intron
ENSG00000251569 (RP11-724O16.1)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000424363}
ENST00000513963 (RP11-724O16.1-001) 169479480-169525922 protein_coding
CIL_00063E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027070-ENSMUSG00000063145 CGP 10090 2:69424340-69667571
GeneTranscriptPositionBiotype
ENSMUSG00000027070 (Lrp2)
low density lipoprotein receptor-related protein 2
ENSMUST00000080953 (Lrp2-001) 69424340-69586065 protein_coding
ENSMUST00000092551 (Lrp2-003) 69526366-69586029 protein_coding
ENSMUST00000100051 (Lrp2-002) 69506204-69586029 protein_coding
ENSMUST00000128742 (Lrp2-004) 69507623-69509145 processed_transcript
ENSMUSG00000063145 (Bbs5)
Bardet-Biedl syndrome 5 (human)
ENSMUST00000074963 (Bbs5-001) 69647208-69667571 protein_coding
ENSMUST00000112286 (Bbs5-003) 69647216-69667571 protein_coding
ENSMUST00000127806 (Bbs5-008) 69656989-69667571 protein_coding
ENSMUST00000130061 (Bbs5-006) 69647263-69653092 retained_intron
ENSMUST00000134659 (Bbs5-002) 69647171-69667318 nonsense_mediated_decay
ENSMUST00000143165 (Bbs5-007) 69655424-69665028 retained_intron
ENSMUST00000144240 (Bbs5-005) 69647253-69654248 retained_intron
ENSMUST00000149276 (Bbs5-004) 69647230-69649591 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063E_0001ENSG00000081479ENST00000263816ENST00000443831ENST00000461418ENST00000491228ENST00000493501ENSG00000163093ENST00000295240ENST00000392663ENST00000443151ENST00000469980ENST00000472667ENST00000475571ENSG00000251569ENST00000513963CIL_00063E_0002ENSMUSG00000027070ENSMUST00000080953ENSMUST00000092551ENSMUST00000100051ENSMUST00000128742ENSMUSG00000063145ENSMUST00000074963ENSMUST00000112286ENSMUST00000127806ENSMUST00000130061ENSMUST00000134659ENSMUST00000143165ENSMUST00000144240ENSMUST00000149276
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063E_0001ENSG00000081479ENST00000263816ENST00000443831ENST00000461418ENST00000491228ENSG00000163093ENST00000295240ENST00000392663ENST00000443151ENST00000472667ENSG00000251569ENST00000513963CIL_00063E_0002ENSMUSG00000027070ENSMUST00000080953ENSMUST00000100051ENSMUSG00000063145ENSMUST00000074963ENSMUST00000112286ENSMUST00000127806ENSMUST00000130061ENSMUST00000134659ENSMUST00000143165ENSMUST00000144240ENSMUST00000149276
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000081479 ENST00000263816 N/A 0.004±0.00 50.490±0.00 1.845±0.50 N/A 0.066±0.00 N/A 1.273±1.26 0.016±0.00 1.673±0.00 N/A 0.028±0.02 3.052±1.49 0.131±0.00
ENST00000443831 N/A N/A N/A 6.990±0.00 0.354±0.00 0.013±0.00 N/A N/A 0.050±0.00 N/A N/A 0.048±0.00 N/A N/A
ENST00000461418 N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A 0.158±0.00 N/A N/A
ENST00000491228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A
ENST00000493501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163093 ENST00000295240 0.237±0.00 0.470±0.00 N/A 1.211±0.31 N/A N/A N/A 1.454±0.00 N/A N/A N/A 1.903±1.46 0.346±0.11 11.037±0.00
ENST00000392663 0.796±0.00 0.719±0.00 N/A 1.579±0.00 N/A 0.428±0.19 N/A 1.192±0.00 0.535±0.00 1.507±0.06 N/A 1.429±0.48 1.084±0.14 13.232±0.00
ENST00000443151 N/A N/A N/A N/A N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472667 0.615±0.00 1.346±0.00 0.824±0.00 0.589±0.00 N/A 0.500±0.00 N/A 0.165±0.00 0.469±0.00 N/A N/A 1.422±1.33 0.358±0.00 N/A
ENST00000475571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251569 ENST00000513963 N/A N/A N/A N/A N/A 0.323±0.00 N/A N/A N/A N/A N/A N/A N/A 8.262±3.72
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027070 ENSMUST00000080953 1.632±1.56 0.050±0.01 0.057±0.04 0.223±0.13 0.022±0.01 0.042±0.01 0.176±0.02 115.025±28.34 0.026±0.02 6.059±1.40 0.003±0.00 1.688±0.61 10.045±12.65 0.318±0.17
ENSMUST00000092551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000100051 N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.970±0.03
ENSMUST00000128742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000063145 ENSMUST00000074963 0.824±0.31 N/A 4.629±1.97 2.911±0.33 0.658±0.23 0.410±0.04 0.801±0.32 0.754±0.38 1.318±0.61 1.286±0.00 1.413±0.27 1.521±1.03 3.707±0.89 20.460±2.92
ENSMUST00000112286 N/A 1.068±0.48 N/A N/A 0.203±0.00 0.698±0.20 0.224±0.09 0.374±0.09 0.449±0.11 0.926±0.00 N/A 1.025±0.28 4.171±0.00 12.066±0.00
ENSMUST00000127806 N/A N/A N/A 6.685±0.00 N/A N/A N/A N/A N/A N/A N/A 4.953±1.42 4.564±2.54 68.919±0.00
ENSMUST00000130061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A
ENSMUST00000134659 0.640±0.13 0.444±0.10 N/A N/A N/A 0.554±0.31 N/A 0.227±0.00 0.319±0.10 0.444±0.00 0.517±0.21 1.279±1.02 5.088±0.00 24.140±17.73
ENSMUST00000143165 N/A N/A N/A N/A 0.575±0.00 0.336±0.00 N/A 0.604±0.00 0.320±0.08 N/A N/A 1.748±0.00 N/A N/A
ENSMUST00000144240 N/A N/A N/A N/A N/A 0.389±0.00 N/A 0.711±0.00 N/A N/A N/A 1.576±0.00 N/A N/A
ENSMUST00000149276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A

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