C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 13 (sodium/sulfate symporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000081800 SLC13A1 9606 - 7:123113531-123199986 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000194130 SLC13A1-001 123113531-123199986 protein_coding
  ENST00000427975 SLC13A1-003 123114525-123199972 nonsense_mediated_decay
  ENST00000439260 SLC13A1-002 123115375-123199971 nonsense_mediated_decay
  ENST00000539873 SLC13A1-201 123115375-123181146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000194130ENST00000427975ENST00000539873
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000194130 0.002±0.00 N/A 0.004±0.00 0.011±0.00 0.037±0.01 0.005±0.00 0.740±0.69 0.080±0.08 0.296±0.00 0.008±0.00 0.049±0.03 0.008±0.00 0.014±0.01
ENST00000427975 N/A 5.234±0.00 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000539873 N/A N/A 0.001±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EA CIL_0001EA_0001 CGP 7:122994704-123199986
CIL_0001E3 CIL_0001E3_0001 CGP 7:123113531-123535077

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0008271 IEA secondary active sulfate transmembrane transporter activity
GO:0008272 IEA sulfate transport
GO:0015382 IEA sodium:sulfate symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport
GO:1902358 IEA sulfate transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045638 slc13a1 solute carrier family 13 (sodium/sulphate symporters), member 1 protein_coding Danio_rerio
ENSMUSG00000029700 Slc13a1 solute carrier family 13 (sodium/sulfate symporters), member 1 protein_coding Mus_musculus

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