C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenophosphate synthetase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000086475 SEPHS1 9606 - 10:13317424-13348298 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327347 SEPHS1-001 13317424-13348297 protein_coding
  ENST00000378614 SEPHS1-002 13318080-13348280 protein_coding
  ENST00000413411 SEPHS1-003 13333877-13347358 protein_coding
  ENST00000425947 SEPHS1-004 13333901-13340790 protein_coding
  ENST00000494329 SEPHS1-005 13338716-13345460 processed_transcript
  ENST00000545675 SEPHS1-201 13317439-13348298 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327347ENST00000378614ENST00000413411ENST00000545675
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327347 4.601±0.00 5.143±0.00 N/A 0.854±0.00 7.599±0.00 3.675±0.02 1.341±0.00 6.089±0.00 1.408±0.00 1.125±0.47 3.008±0.00 5.027±2.81 3.528±0.97 5.904±0.00
ENST00000378614 N/A N/A 0.487±0.00 N/A N/A N/A 1.276±0.00 N/A N/A 1.306±0.00 N/A 1.839±0.00 N/A 2.206±0.00
ENST00000413411 N/A N/A 1.698±0.00 N/A N/A 3.305±0.00 N/A N/A 2.346±0.00 N/A 2.159±0.00 N/A 15.088±0.00 N/A
ENST00000545675 1.541±0.00 2.552±0.00 N/A 1.412±0.00 1.407±0.00 3.051±0.00 2.086±0.00 N/A 4.429±0.00 0.823±0.00 N/A 65.765±0.00 11.726±9.44 10.111±6.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0001 VISTA 10:13045564-13647145
CIL_00062N CIL_00062N_0002 CGP 10:13317424-13528974

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004756 IEA selenide, water dikinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005525 TAS GTP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006464 TAS cellular protein modification process
GO:0016310 IEA phosphorylation
GO:0031965 IDA nuclear membrane
GO:0042803 IDA protein homodimerization activity
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058292 sephs1 selenophosphate synthetase 1 protein_coding Danio_rerio
ENSMUSG00000026662 Sephs1 selenophosphate synthetase 1 protein_coding Mus_musculus

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