C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenophosphate synthetase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026662 Sephs1 10090 + 2:4881564-4910557 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027973 Sephs1-001 4881564-4910557 protein_coding
  ENSMUST00000115019 Sephs1-002 4882245-4908137 protein_coding
  ENSMUST00000140045 Sephs1-004 4884384-4905533 processed_transcript
  ENSMUST00000144565 Sephs1-003 4884057-4889216 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027973ENSMUST00000115019ENSMUST00000140045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027973 2.374±0.83 4.387±1.28 2.868±0.03 4.929±3.05 2.206±0.49 1.482±0.49 0.867±0.11 2.928±0.46 2.336±0.63 2.127±0.40 1.568±0.36 2.800±0.89 1.979±0.82 0.628±0.12
ENSMUST00000115019 12.277±2.80 10.762±1.74 7.361±0.00 15.607±10.94 9.688±0.76 6.493±0.50 3.885±0.49 10.087±1.18 6.962±2.93 11.097±0.59 4.137±0.23 14.016±4.89 6.741±4.50 3.146±0.07
ENSMUST00000140045 N/A N/A N/A 5.694±0.00 N/A N/A N/A N/A N/A N/A N/A 26.810±0.00 12.291±6.52 3.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000965 CIL_000965_0002 VISTA 2:4287585-4888762
CIL_000968 CIL_000968_0002 VISTA 2:4582644-5183763

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004756 IEA selenide, water dikinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005886 ISS plasma membrane
GO:0008150 ND biological_process
GO:0016310 IEA phosphorylation
GO:0031965 ISS nuclear membrane
GO:0042803 ISS protein homodimerization activity
GO:0046982 ISS protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058292 sephs1 selenophosphate synthetase 1 protein_coding Danio_rerio
ENSG00000086475 SEPHS1 selenophosphate synthetase 1 protein_coding Homo_sapiens

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