C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein, large, P0
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089157 RPLP0 9606 - 12:120196686-120201235 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228306 RPLP0-201 120196707-120201211 protein_coding
  ENST00000313104 RPLP0-003 120196702-120201107 protein_coding
  ENST00000392514 RPLP0-001 120196686-120201211 protein_coding
  ENST00000546564 RPLP0-022 120198556-120200864 retained_intron
  ENST00000546989 RPLP0-008 120196702-120201110 protein_coding
  ENST00000546990 RPLP0-025 120196842-120200815 protein_coding
  ENST00000547173 RPLP0-026 120197323-120200825 nonsense_mediated_decay
  ENST00000547191 RPLP0-014 120198704-120201108 protein_coding
  ENST00000547211 RPLP0-019 120197322-120200832 protein_coding
  ENST00000547475 RPLP0-027 120197322-120200824 nonsense_mediated_decay
  ENST00000548495 RPLP0-012 120198859-120201110 retained_intron
  ENST00000548551 RPLP0-011 120198980-120201110 retained_intron
  ENST00000548568 RPLP0-016 120198358-120200832 retained_intron
  ENST00000549098 RPLP0-013 120196708-120201110 nonsense_mediated_decay
  ENST00000549242 RPLP0-010 120198981-120201110 retained_intron
  ENST00000550296 RPLP0-020 120198745-120200825 processed_transcript
  ENST00000550423 RPLP0-015 120198943-120200852 protein_coding
  ENST00000550856 RPLP0-009 120197372-120201235 protein_coding
  ENST00000551150 RPLP0-002 120196699-120201099 protein_coding
  ENST00000551217 RPLP0-007 120196699-120197375 retained_intron
  ENST00000551258 RPLP0-024 120196814-120201097 nonsense_mediated_decay
  ENST00000551336 RPLP0-017 120199457-120201095 processed_transcript
  ENST00000551783 RPLP0-018 120199166-120201085 retained_intron
  ENST00000551914 RPLP0-021 120198947-120200820 protein_coding
  ENST00000552292 RPLP0-006 120196702-120197808 protein_coding
  ENST00000552461 RPLP0-004 120196707-120201110 retained_intron
  ENST00000552902 RPLP0-023 120198756-120201089 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228306ENST00000313104ENST00000392514ENST00000546989ENST00000547211ENST00000549098ENST00000550296ENST00000550856ENST00000551258ENST00000551914
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228306 132.451±0.00 135.373±0.00 N/A 30.718±0.00 85.889±48.89 227.628±0.00 6.783±0.00 220.215±0.00 55.357±0.00 80.674±0.00 63.960±43.46 577.311±434.62 360.568±109.02 90.910±21.29
ENST00000313104 N/A N/A 12.181±0.00 10.285±0.00 N/A N/A 10.292±0.00 N/A 21.057±0.00 N/A N/A N/A N/A N/A
ENST00000392514 194.393±0.00 311.362±0.00 19.844±0.00 30.682±3.48 162.348±45.23 282.121±78.24 8.506±0.00 142.669±20.23 83.555±9.11 66.378±0.00 93.406±14.91 300.248±184.67 575.007±171.80 190.426±0.00
ENST00000546989 N/A N/A N/A 7.573±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547211 206.716±0.00 151.239±0.00 N/A 26.034±0.00 N/A N/A 58.055±0.00 N/A 101.543±0.00 198.568±0.00 141.130±0.00 N/A N/A N/A
ENST00000549098 N/A N/A N/A N/A N/A N/A 32.643±0.00 N/A 84.375±0.00 151.749±0.00 N/A 82.891±0.00 N/A 28.383±0.00
ENST00000550296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 255.708±0.00 74.152±0.00
ENST00000550856 N/A N/A N/A N/A N/A N/A 41.624±0.00 N/A N/A N/A N/A 166.241±55.42 228.205±93.18 36.181±0.00
ENST00000551258 N/A N/A N/A N/A N/A N/A 29.205±19.50 32.303±0.00 22.574±0.00 89.007±66.11 58.770±37.22 96.360±0.00 N/A N/A
ENST00000551914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 671.181±0.00 235.272±0.00 112.134±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS:IEA translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042254 IEA ribosome biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051783 rplp0 ribosomal protein, large, P0 protein_coding Danio_rerio
ENSMUSG00000063696 Gm8730 predicted pseudogene 8730 protein_coding Mus_musculus
ENSMUSG00000067274 Rplp0 ribosomal protein, large, P0 protein_coding Mus_musculus

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