C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392514 RPLP0-001 ENSG00000089157 9606 - 12:120196686-120201211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392514 194.393±0.00 311.362±0.00 19.844±0.00 30.682±3.48 162.348±45.23 282.121±78.24 8.506±0.00 142.669±20.23 83.555±9.11 66.378±0.00 93.406±14.91 300.248±184.67 575.007±171.80 190.426±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS:IEA translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042254 IEA ribosome biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086519 Rplp0-001 protein_coding Mus_musculus 0 1458
ENSMUST00000076373 Gm8730-201 protein_coding Mus_musculus 0 1391
ENSMUST00000180422 Gm9625-001 processed_pseudogene Mus_musculus 0 1253
ENSMUST00000121456 Gm14165-001 processed_pseudogene Mus_musculus 0 1212
ENSMUST00000122125 Rplp0-ps1-001 processed_pseudogene Mus_musculus 0 1064
ENSMUST00000156359 Rplp0-004 protein_coding Mus_musculus 0 1029
ENSMUST00000145890 Gucd1-002 nonsense_mediated_decay Mus_musculus 0 998
ENSDART00000073462 rplp0-001 protein_coding Danio_rerio 0 747
ENSMUST00000152976 Rplp0-002 protein_coding Mus_musculus 0 706
ENSMUST00000155584 Rplp0-003 retained_intron Mus_musculus 0 556
ENSMUST00000121323 Gm8199-001 processed_pseudogene Mus_musculus 0 549
ENSDART00000150163 rplp0-002 protein_coding Danio_rerio 0 473
ENSMUST00000118250 Gm8595-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000163928 Gm8338-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000118929 Gm15355-001 processed_pseudogene Mus_musculus 1.00053e-42 178
ENSMUST00000122159 Gm14564-001 processed_pseudogene Mus_musculus 8e-34 147

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