C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549098 RPLP0-013 ENSG00000089157 9606 - 12:120196708-120201110 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverLungOvaryTestisENST00000549098
Transcript ID Heart Liver Lung Ovary Testis
ENST00000549098 32.643±0.00 84.375±0.00 151.749±0.00 82.891±0.00 28.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086519 Rplp0-001 protein_coding Mus_musculus 0 1373
ENSMUST00000076373 Gm8730-201 protein_coding Mus_musculus 0 1339
ENSMUST00000180422 Gm9625-001 processed_pseudogene Mus_musculus 0 1203
ENSMUST00000121456 Gm14165-001 processed_pseudogene Mus_musculus 0 1160
ENSMUST00000156359 Rplp0-004 protein_coding Mus_musculus 0 1072
ENSMUST00000122125 Rplp0-ps1-001 processed_pseudogene Mus_musculus 0 1014
ENSMUST00000145890 Gucd1-002 nonsense_mediated_decay Mus_musculus 0 948
ENSDART00000073462 rplp0-001 protein_coding Danio_rerio 0 702
ENSMUST00000152976 Rplp0-002 protein_coding Mus_musculus 0 654
ENSMUST00000155584 Rplp0-003 retained_intron Mus_musculus 0 505
ENSMUST00000121323 Gm8199-001 processed_pseudogene Mus_musculus 0 503
ENSDART00000150163 rplp0-002 protein_coding Danio_rerio 0 429
ENSMUST00000118250 Gm8595-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000163928 Gm8338-001 processed_pseudogene Mus_musculus 1.96182e-44 183
ENSMUST00000118929 Gm15355-001 processed_pseudogene Mus_musculus 1.00053e-42 178
ENSMUST00000122159 Gm14564-001 processed_pseudogene Mus_musculus 8e-34 147

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