C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547211 RPLP0-019 ENSG00000089157 9606 - 12:120197322-120200832 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLiverLungMuscleENST00000547211
Transcript ID Adipose Adrenal Brain Heart Liver Lung Muscle
ENST00000547211 206.716±0.00 151.239±0.00 26.034±0.00 58.055±0.00 101.543±0.00 198.568±0.00 141.130±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0042254 IEA ribosome biogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076373 Gm8730-201 protein_coding Mus_musculus 0 881
ENSMUST00000086519 Rplp0-001 protein_coding Mus_musculus 0 876
ENSMUST00000156359 Rplp0-004 protein_coding Mus_musculus 0 861
ENSMUST00000180422 Gm9625-001 processed_pseudogene Mus_musculus 0 854
ENSMUST00000121456 Gm14165-001 processed_pseudogene Mus_musculus 0 846
ENSMUST00000122125 Rplp0-ps1-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000145890 Gucd1-002 nonsense_mediated_decay Mus_musculus 0 678
ENSDART00000073462 rplp0-001 protein_coding Danio_rerio 0 571
ENSMUST00000152976 Rplp0-002 protein_coding Mus_musculus 0 436
ENSMUST00000121323 Gm8199-001 processed_pseudogene Mus_musculus 0 416
ENSDART00000150163 rplp0-002 protein_coding Danio_rerio 0 339
ENSMUST00000155584 Rplp0-003 retained_intron Mus_musculus 0 287
ENSMUST00000118250 Gm8595-001 processed_pseudogene Mus_musculus 0.000000000000001 88
ENSMUST00000163928 Gm8338-001 processed_pseudogene Mus_musculus 0.0000000001 71

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