C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: striatin, calmodulin binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090372 STRN4 9606 - 19:46719507-46746994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263280 STRN4-001 46719507-46746480 protein_coding
  ENST00000391910 STRN4-002 46719511-46746881 protein_coding
  ENST00000435164 STRN4-003 46725333-46746863 nonsense_mediated_decay
  ENST00000539396 STRN4-004 46720071-46746994 protein_coding
  ENST00000593979 STRN4-008 46730836-46746945 protein_coding
  ENST00000594287 STRN4-021 46722338-46727959 protein_coding
  ENST00000594357 STRN4-018 46722934-46728406 processed_transcript
  ENST00000594581 STRN4-006 46719513-46726265 retained_intron
  ENST00000594704 STRN4-010 46730733-46746405 nonsense_mediated_decay
  ENST00000594847 STRN4-014 46727907-46733449 retained_intron
  ENST00000595357 STRN4-005 46720699-46730857 retained_intron
  ENST00000596012 STRN4-009 46733200-46746945 protein_coding
  ENST00000596016 STRN4-015 46728685-46731788 processed_transcript
  ENST00000597021 STRN4-013 46733110-46739507 protein_coding
  ENST00000597063 STRN4-012 46733075-46745830 protein_coding
  ENST00000598074 STRN4-022 46722923-46724892 retained_intron
  ENST00000599231 STRN4-016 46727453-46730931 retained_intron
  ENST00000600358 STRN4-017 46724828-46738172 nonsense_mediated_decay
  ENST00000600615 STRN4-023 46720409-46723211 protein_coding
  ENST00000600710 STRN4-011 46736205-46746944 processed_transcript
  ENST00000601631 STRN4-020 46722860-46728315 retained_intron
  ENST00000601869 STRN4-007 46719513-46721752 retained_intron
  ENST00000602223 STRN4-019 46725481-46728331 processed_transcript
  ENST00000602397 STRN4-025 46728687-46736349 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263280ENST00000391910ENST00000539396ENST00000593979ENST00000594287ENST00000594704ENST00000600358ENST00000602397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263280 27.499±0.00 31.163±0.00 N/A 15.599±9.38 25.154±0.00 12.642±8.81 7.781±6.92 18.407±0.00 4.281±0.90 15.508±13.47 11.734±0.00 40.825±6.03 29.158±1.87 82.780±22.13
ENST00000391910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.831±0.00 N/A N/A N/A
ENST00000539396 N/A N/A N/A N/A N/A N/A N/A 1.822±0.00 N/A N/A N/A N/A N/A N/A
ENST00000593979 N/A N/A N/A N/A N/A N/A 2.391±0.00 N/A N/A N/A 3.101±0.00 N/A N/A N/A
ENST00000594287 N/A N/A 6.752±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594704 N/A N/A N/A N/A 9.251±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.807±0.00 N/A N/A N/A
ENST00000602397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 114.034±0.00 122.299±0.00 309.851±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044E CIL_00044E_0003 CGP 19:46719507-46776988

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000159 IDA protein phosphatase type 2A complex
GO:0005515 IPI:IEA protein binding
GO:0005516 NAS calmodulin binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0019904 IEA protein domain specific binding
GO:0032403 IDA protein complex binding
GO:0042995 IEA cell projection
GO:0043197 IEA dendritic spine
GO:0043234 IEA protein complex
GO:0051721 IDA protein phosphatase 2A binding
GO:0070016 IPI armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044202 strn4 striatin, calmodulin binding protein 4 protein_coding Danio_rerio
ENSDARG00000086823 strn4 striatin, calmodulin binding protein 4 protein_coding Danio_rerio
ENSMUSG00000030374 Strn4 striatin, calmodulin binding protein 4 protein_coding Mus_musculus

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