C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: striatin, calmodulin binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435164 STRN4-003 ENSG00000090372 9606 - 19:46725333-46746863 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044E CIL_00044E_0003 CGP 19:46719507-46776988

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 IDA protein phosphatase type 2A complex
GO:0005515 IPI protein binding
GO:0005516 NAS calmodulin binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0032403 IDA protein complex binding
GO:0042995 IEA cell projection
GO:0051721 IDA protein phosphatase 2A binding
GO:0070016 IPI armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108495 Strn4-002 protein_coding Mus_musculus 0 905
ENSMUST00000019220 Strn4-001 protein_coding Mus_musculus 0 905
ENSMUST00000184708 Strn4-013 nonsense_mediated_decay Mus_musculus 0 665
ENSMUST00000138070 Strn4-005 retained_intron Mus_musculus 0 403
ENSMUST00000184280 Strn4-012 nonsense_mediated_decay Mus_musculus 0 377
ENSMUST00000185011 Strn4-014 nonsense_mediated_decay Mus_musculus 0 366
ENSMUST00000137885 Strn4-004 protein_coding Mus_musculus 0 313
ENSMUST00000127835 Strn4-007 processed_transcript Mus_musculus 0 252
ENSMUST00000123247 Strn4-006 retained_intron Mus_musculus 0 219

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