C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: striatin, calmodulin binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263280 STRN4-001 ENSG00000090372 9606 - 19:46719507-46746480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263280
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263280 27.499±0.00 31.163±0.00 15.599±9.38 25.154±0.00 12.642±8.81 7.781±6.92 18.407±0.00 4.281±0.90 15.508±13.47 11.734±0.00 40.825±6.03 29.158±1.87 82.780±22.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044E CIL_00044E_0003 CGP 19:46719507-46776988

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 IDA protein phosphatase type 2A complex
GO:0005515 IPI:IEA protein binding
GO:0005516 NAS calmodulin binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0032403 IDA protein complex binding
GO:0042995 IEA cell projection
GO:0051721 IDA protein phosphatase 2A binding
GO:0070016 IPI armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108495 Strn4-002 protein_coding Mus_musculus 0 2798
ENSMUST00000019220 Strn4-001 protein_coding Mus_musculus 0 2728
ENSMUST00000184708 Strn4-013 nonsense_mediated_decay Mus_musculus 0 832
ENSMUST00000185011 Strn4-014 nonsense_mediated_decay Mus_musculus 0 734
ENSMUST00000184694 Strn4-011 protein_coding Mus_musculus 0 665
ENSMUST00000184280 Strn4-012 nonsense_mediated_decay Mus_musculus 0 641
ENSMUST00000131721 Strn4-003 retained_intron Mus_musculus 0 514
ENSMUST00000138070 Strn4-005 retained_intron Mus_musculus 0 403
ENSMUST00000123247 Strn4-006 retained_intron Mus_musculus 0 385
ENSMUST00000183680 Strn4-010 retained_intron Mus_musculus 0 346
ENSMUST00000127835 Strn4-007 processed_transcript Mus_musculus 0 340
ENSMUST00000137885 Strn4-004 protein_coding Mus_musculus 0 316

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