C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: striatin, calmodulin binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030374 Strn4 10090 + 7:16815889-16840931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019220 Strn4-001 16815889-16840931 protein_coding
  ENSMUST00000108495 Strn4-002 16816317-16840927 protein_coding
  ENSMUST00000123247 Strn4-006 16828779-16831639 retained_intron
  ENSMUST00000123510 Strn4-009 16833165-16834652 retained_intron
  ENSMUST00000127835 Strn4-007 16830134-16831509 processed_transcript
  ENSMUST00000131721 Strn4-003 16836228-16840931 retained_intron
  ENSMUST00000134350 Strn4-008 16832614-16833991 retained_intron
  ENSMUST00000137885 Strn4-004 16822048-16824182 protein_coding
  ENSMUST00000138070 Strn4-005 16824058-16828751 retained_intron
  ENSMUST00000183680 Strn4-010 16838556-16840019 retained_intron
  ENSMUST00000184280 Strn4-012 16816378-16828814 nonsense_mediated_decay
  ENSMUST00000184694 Strn4-011 16837635-16840236 protein_coding
  ENSMUST00000184708 Strn4-013 16823071-16833975 nonsense_mediated_decay
  ENSMUST00000185011 Strn4-014 16831099-16837982 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019220ENSMUST00000108495ENSMUST00000183680ENSMUST00000184280ENSMUST00000184694ENSMUST00000184708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019220 N/A N/A N/A 29.786±0.00 N/A N/A 7.621±1.50 N/A N/A N/A 2.410±0.76 N/A N/A N/A
ENSMUST00000108495 32.356±5.13 44.640±6.33 27.588±1.12 51.434±16.38 32.421±14.09 47.222±7.52 18.678±2.83 28.247±2.58 16.464±4.74 54.805±2.70 3.057±0.74 42.286±15.06 16.573±5.17 43.728±7.05
ENSMUST00000183680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 320.823±0.00 N/A N/A
ENSMUST00000184280 N/A N/A N/A 86.543±0.00 N/A N/A N/A N/A N/A N/A N/A 49.064±0.00 N/A 123.802±0.00
ENSMUST00000184694 36.355±0.00 N/A N/A N/A N/A N/A N/A 22.297±1.24 N/A N/A N/A N/A N/A N/A
ENSMUST00000184708 N/A N/A N/A 124.050±0.00 N/A N/A N/A N/A N/A N/A N/A 50.023±0.00 41.068±2.21 22.874±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000159 IEA protein phosphatase type 2A complex
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0019904 IEA protein domain specific binding
GO:0032403 IEA protein complex binding
GO:0043197 IEA dendritic spine
GO:0043234 IEA protein complex
GO:0051721 IEA protein phosphatase 2A binding
GO:0070016 IEA armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044202 strn4 striatin, calmodulin binding protein 4 protein_coding Danio_rerio
ENSDARG00000086823 strn4 striatin, calmodulin binding protein 4 protein_coding Danio_rerio
ENSG00000090372 STRN4 striatin, calmodulin binding protein 4 protein_coding Homo_sapiens

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