C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 48
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043411 Usp48 10090 + 4:137593755-137658537 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055131 Usp48-001 137594207-137658531 protein_coding
  ENSMUST00000105837 Usp48-004 137618471-137625291 protein_coding
  ENSMUST00000105838 Usp48-006 137594228-137625291 protein_coding
  ENSMUST00000105839 Usp48-003 137594207-137625291 protein_coding
  ENSMUST00000105840 Usp48-002 137594140-137658531 protein_coding
  ENSMUST00000125151 Usp48-016 137657395-137658530 processed_transcript
  ENSMUST00000128065 Usp48-010 137623371-137633623 protein_coding
  ENSMUST00000131755 Usp48-011 137633434-137637422 protein_coding
  ENSMUST00000138599 Usp48-007 137619728-137623370 processed_transcript
  ENSMUST00000141426 Usp48-009 137633363-137655255 protein_coding
  ENSMUST00000141628 Usp48-012 137633838-137653006 protein_coding
  ENSMUST00000151807 Usp48-015 137644341-137655248 protein_coding
  ENSMUST00000152985 Usp48-017 137625163-137658537 processed_transcript
  ENSMUST00000153100 Usp48-005 137593755-137605908 protein_coding
  ENSMUST00000153869 Usp48-013 137644426-137652840 protein_coding
  ENSMUST00000154395 Usp48-008 137621159-137633189 processed_transcript
  ENSMUST00000157012 Usp48-014 137650301-137656331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055131ENSMUST00000105837ENSMUST00000105839ENSMUST00000105840ENSMUST00000141628ENSMUST00000152985ENSMUST00000153100ENSMUST00000154395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055131 3.030±1.20 N/A 4.783±0.23 6.402±2.73 2.590±0.50 2.110±0.56 0.901±0.13 2.071±0.67 2.968±1.70 3.462±0.84 0.979±0.24 9.715±2.79 8.155±2.53 3.399±0.35
ENSMUST00000105837 6.008±2.23 7.404±0.53 N/A 10.139±0.00 5.931±1.25 4.220±0.55 1.473±0.50 2.899±0.72 2.627±1.37 5.267±1.10 1.258±0.26 15.059±1.27 7.485±0.98 3.020±0.00
ENSMUST00000105839 5.984±0.00 19.385±0.61 N/A 11.153±0.00 10.172±1.18 8.778±1.85 N/A N/A 2.416±0.74 7.704±0.70 N/A 23.031±8.22 33.399±9.19 11.801±7.72
ENSMUST00000105840 4.093±1.39 5.617±3.03 5.849±0.55 6.959±1.43 3.255±0.76 3.145±0.34 1.782±0.60 3.079±1.09 3.235±1.52 4.575±1.46 1.660±0.57 9.862±3.03 6.152±1.34 1.971±0.28
ENSMUST00000141628 N/A N/A N/A 38.655±0.00 N/A N/A N/A N/A N/A N/A N/A 79.726±0.00 76.317±4.37 37.304±0.00
ENSMUST00000152985 4.500±0.00 N/A 4.873±0.00 7.718±0.00 N/A N/A N/A 3.363±0.00 N/A N/A N/A 9.053±0.00 N/A N/A
ENSMUST00000153100 N/A 41.585±18.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.231±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090301 usp48 ubiquitin specific peptidase 48 protein_coding Danio_rerio
ENSG00000090686 USP48 ubiquitin specific peptidase 48 protein_coding Homo_sapiens

Loading