C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuronal cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000091129 NRCAM 9606 - 7:108147623-108456717 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351718 NRCAM-003 108147662-108456339 protein_coding
  ENST00000379022 NRCAM-201 108149910-108240049 protein_coding
  ENST00000379024 NRCAM-001 108148117-108456321 protein_coding
  ENST00000379028 NRCAM-202 108147626-108456397 protein_coding
  ENST00000413765 NRCAM-203 108147626-108456397 protein_coding
  ENST00000415105 NRCAM-012 108150049-108176773 retained_intron
  ENST00000417701 NRCAM-005 108197995-108243240 protein_coding
  ENST00000418239 NRCAM-018 108234630-108456717 protein_coding
  ENST00000419936 NRCAM-015 108232417-108313295 protein_coding
  ENST00000425651 NRCAM-006 108149910-108240064 protein_coding
  ENST00000442580 NRCAM-017 108232399-108328488 protein_coding
  ENST00000445634 NRCAM-011 108149952-108175357 protein_coding
  ENST00000456431 NRCAM-016 108232417-108328655 protein_coding
  ENST00000465585 NRCAM-013 108156387-108178114 processed_transcript
  ENST00000489800 NRCAM-009 108207228-108209603 retained_intron
  ENST00000522550 NRCAM-007 108147623-108156637 processed_transcript
  ENST00000613830 NRCAM-204 108178150-108456385 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351718ENST00000379022ENST00000379024ENST00000413765ENST00000415105ENST00000417701ENST00000425651ENST00000442580ENST00000445634ENST00000465585ENST00000522550ENST00000613830
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351718 1.990±0.00 0.133±0.00 N/A 6.033±0.00 0.547±0.27 0.363±0.00 N/A 3.129±0.00 0.046±0.00 0.243±0.00 N/A 0.389±0.17 2.049±0.29 0.791±0.00
ENST00000379022 N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A 0.361±0.00
ENST00000379024 N/A N/A N/A 7.745±0.00 N/A 0.154±0.00 0.039±0.00 N/A N/A 0.082±0.00 N/A 0.195±0.02 0.639±0.00 0.152±0.00
ENST00000413765 N/A N/A N/A 14.100±5.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415105 N/A N/A N/A N/A N/A 0.575±0.00 N/A N/A N/A N/A N/A N/A N/A 1.253±0.00
ENST00000417701 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A 0.589±0.00 N/A N/A
ENST00000425651 N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A
ENST00000442580 N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000445634 N/A N/A N/A N/A N/A N/A N/A 0.554±0.00 N/A N/A 0.258±0.00 1.475±0.00 N/A 1.680±0.00
ENST00000465585 N/A N/A N/A N/A 0.895±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522550 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A 0.058±0.00 N/A 0.006±0.00 N/A N/A N/A
ENST00000613830 N/A N/A 0.681±0.00 N/A 0.150±0.00 N/A 0.023±0.00 N/A N/A N/A 0.024±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0001 VISTA 7:107646717-108248447
CIL_0008PF CIL_0008PF_0001 VISTA 7:108074195-108676805
CIL_0008CE CIL_0008CE_0001 VISTA 7:108074285-108676732

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEP angiogenesis
GO:0001764 NAS neuron migration
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0007409 NAS axonogenesis
GO:0007411 TAS axon guidance
GO:0007413 NAS axonal fasciculation
GO:0007416 TAS synapse assembly
GO:0007417 NAS central nervous system development
GO:0008104 IEA protein localization
GO:0009897 NAS external side of plasma membrane
GO:0010975 IEA regulation of neuron projection development
GO:0016337 NAS single organismal cell-cell adhesion
GO:0019227 IEA neuronal action potential propagation
GO:0030424 IEA axon
GO:0030506 IDA ankyrin binding
GO:0030516 NAS regulation of axon extension
GO:0031290 IEA retinal ganglion cell axon guidance
GO:0034113 IEA heterotypic cell-cell adhesion
GO:0043005 NAS neuron projection
GO:0043194 ISS axon initial segment
GO:0045162 IDA clustering of voltage-gated sodium channels
GO:0045202 IEA synapse
GO:0045666 NAS positive regulation of neuron differentiation
GO:0086080 IEA protein binding involved in heterotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006396 nrcama neuronal cell adhesion molecule a protein_coding Danio_rerio
ENSMUSG00000020598 Nrcam neuronal cell adhesion molecule protein_coding Mus_musculus

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