C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008PF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm16 VISTA 9606 7:108074195-108676805
GeneTranscriptPositionBiotype
ENSG00000091128 (LAMB4)
laminin, beta 4 		ENST00000205386 (LAMB4-001) 108023548-108130355 protein_coding
ENST00000388781 (LAMB4-201) 108023551-108130356 protein_coding
ENST00000418464 (LAMB4-003) 108075537-108130355 protein_coding
ENST00000422975 (LAMB4-004) 108026561-108063899 protein_coding
ENST00000471677 (LAMB4-005) 108062397-108065858 retained_intron
ENST00000475469 (LAMB4-002) 108062470-108130356 retained_intron
ENST00000475572 (LAMB4-006) 108030945-108044270 processed_transcript
ENST00000483484 (LAMB4-007) 108023811-108037462 processed_transcript
ENSG00000091129 (NRCAM)
neuronal cell adhesion molecule 		ENST00000351718 (NRCAM-003) 108147662-108456339 protein_coding
ENST00000379022 (NRCAM-201) 108149910-108240049 protein_coding
ENST00000379024 (NRCAM-001) 108148117-108456321 protein_coding
ENST00000379028 (NRCAM-202) 108147626-108456397 protein_coding
ENST00000413765 (NRCAM-203) 108147626-108456397 protein_coding
ENST00000415105 (NRCAM-012) 108150049-108176773 retained_intron
ENST00000417701 (NRCAM-005) 108197995-108243240 protein_coding
ENST00000418239 (NRCAM-018) 108234630-108456717 protein_coding
ENST00000419936 (NRCAM-015) 108232417-108313295 protein_coding
ENST00000425651 (NRCAM-006) 108149910-108240064 protein_coding
ENST00000442580 (NRCAM-017) 108232399-108328488 protein_coding
ENST00000445634 (NRCAM-011) 108149952-108175357 protein_coding
ENST00000456431 (NRCAM-016) 108232417-108328655 protein_coding
ENST00000465585 (NRCAM-013) 108156387-108178114 processed_transcript
ENST00000489800 (NRCAM-009) 108207228-108209603 retained_intron
ENST00000522550 (NRCAM-007) 108147623-108156637 processed_transcript
ENST00000613830 (NRCAM-204) 108178150-108456385 protein_coding
ENSG00000128590 (DNAJB9)
DnaJ (Hsp40) homolog, subfamily B, member 9 		ENST00000249356 (DNAJB9-001) 108569568-108574850 protein_coding
ENST00000465725 (DNAJB9-004) 108571715-108574760 processed_transcript
ENST00000491582 (DNAJB9-003) 108569867-108572063 retained_intron
ENSG00000135241 (PNPLA8)
patatin-like phospholipase domain containing 8 		ENST00000257694 (PNPLA8-001) 108471555-108526194 protein_coding
ENST00000415498 (PNPLA8-007) 108515327-108527935 protein_coding
ENST00000422087 (PNPLA8-002) 108471627-108526194 protein_coding
ENST00000426128 (PNPLA8-006) 108470422-108526071 protein_coding
ENST00000427008 (PNPLA8-009) 108514914-108526123 protein_coding
ENST00000436062 (PNPLA8-003) 108471661-108526318 protein_coding
ENST00000453085 (PNPLA8-005) 108472531-108528161 protein_coding
ENST00000453144 (PNPLA8-004) 108471627-108526315 protein_coding
ENST00000462466 (PNPLA8-012) 108496592-108502788 retained_intron
ENST00000476592 (PNPLA8-011) 108496585-108526120 processed_transcript
ENST00000483879 (PNPLA8-010) 108496427-108526163 processed_transcript
ENST00000489738 (PNPLA8-008) 108497481-108569666 processed_transcript
ENSG00000225647 (AC005487.2)
 ENST00000440208 (AC005487.2-001) 108598375-108614267 lincRNA
ENSG00000231006 (RPL7P32)
ribosomal protein L7 pseudogene 32 		ENST00000457119 (RPL7P32-001) 108510233-108510976 processed_pseudogene
ENSG00000266112 (AC007567.1)
 ENST00000582403 (AC007567.1-201) 108358307-108358405 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008PF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm16 VISTA 10090 12:44102519-44705770
GeneTranscriptPositionBiotype
ENSMUSG00000014905 (Dnajb9)
DnaJ (Hsp40) homolog, subfamily B, member 9 		ENSMUST00000015049 (Dnajb9-201) 44205897-44210068 protein_coding
ENSMUSG00000020598 (Nrcam)
neuronal cell adhesion molecule 		ENSMUST00000020939 (Nrcam-201) 44328885-44601846 protein_coding
ENSMUST00000110748 (Nrcam-202) 44328885-44601846 protein_coding
ENSMUSG00000036257 (Pnpla8)
patatin-like phospholipase domain containing 8 		ENSMUST00000043082 (Pnpla8-001) 44269186-44312244 protein_coding
ENSMUST00000122902 (Pnpla8-002) 44221370-44312092 protein_coding
ENSMUST00000125757 (Pnpla8-004) 44275271-44282890 protein_coding
ENSMUST00000143771 (Pnpla8-003) 44282573-44312343 protein_coding
ENSMUST00000156082 (Pnpla8-005) 44299277-44311844 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PF_0001ENSG00000091128ENST00000205386ENST00000388781ENST00000418464ENST00000422975ENST00000471677ENST00000475469ENST00000475572ENST00000483484ENSG00000091129ENST00000351718ENST00000379022ENST00000379024ENST00000379028ENST00000413765ENST00000415105ENST00000417701ENST00000418239ENST00000419936ENST00000425651ENST00000442580ENST00000445634ENST00000456431ENST00000465585ENST00000489800ENST00000522550ENST00000613830ENSG00000128590ENST00000249356ENST00000465725ENST00000491582ENSG00000135241ENST00000257694ENST00000415498ENST00000422087ENST00000426128ENST00000427008ENST00000436062ENST00000453085ENST00000453144ENST00000462466ENST00000476592ENST00000483879ENST00000489738ENSG00000225647ENST00000440208ENSG00000231006ENST00000457119ENSG00000266112ENST00000582403CIL_0008PF_0002ENSMUSG00000014905ENSMUST00000015049ENSMUSG00000020598ENSMUST00000020939ENSMUST00000110748ENSMUSG00000036257ENSMUST00000043082ENSMUST00000122902ENSMUST00000125757ENSMUST00000143771ENSMUST00000156082
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PF_0001ENSG00000091128ENST00000205386ENST00000388781ENST00000418464ENST00000422975ENST00000471677ENST00000475469ENST00000475572ENST00000483484ENSG00000091129ENST00000351718ENST00000379022ENST00000379024ENST00000413765ENST00000415105ENST00000417701ENST00000425651ENST00000442580ENST00000445634ENST00000465585ENST00000522550ENST00000613830ENSG00000128590ENST00000249356ENSG00000135241ENST00000257694ENST00000422087ENST00000436062ENST00000453085ENST00000453144ENSG00000225647ENST00000440208ENSG00000231006ENST00000457119ENSG00000266112ENST00000582403CIL_0008PF_0002ENSMUSG00000014905ENSMUST00000015049ENSMUSG00000020598ENSMUST00000020939ENSMUST00000110748ENSMUSG00000036257ENSMUST00000043082ENSMUST00000122902ENSMUST00000143771ENSMUST00000156082
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091128 ENST00000205386 N/A N/A N/A N/A N/A 0.004±0.00 N/A 0.077±0.00 N/A N/A N/A N/A 1.909±0.97 N/A
ENST00000388781 N/A N/A N/A N/A N/A 0.004±0.00 N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A
ENST00000418464 0.047±0.00 0.109±0.00 0.098±0.00 0.007±0.00 0.017±0.00 0.074±0.00 0.068±0.02 0.046±0.00 0.026±0.00 0.022±0.00 0.005±0.00 0.024±0.01 N/A N/A
ENST00000422975 N/A 0.020±0.00 0.113±0.00 0.029±0.00 0.024±0.00 N/A 0.023±0.00 N/A 0.051±0.00 N/A N/A 0.016±0.00 N/A 0.488±0.32
ENST00000471677 0.086±0.00 N/A 0.341±0.00 N/A N/A N/A 0.138±0.00 0.508±0.00 N/A N/A N/A 0.024±0.00 N/A N/A
ENST00000475469 N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A
ENST00000475572 N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A N/A 0.050±0.00 N/A 0.320±0.00
ENST00000483484 0.030±0.00 N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A 0.018±0.00 2.569±0.00 0.282±0.00
ENSG00000091129 ENST00000351718 1.990±0.00 0.133±0.00 N/A 6.033±0.00 0.547±0.27 0.363±0.00 N/A 3.129±0.00 0.046±0.00 0.243±0.00 N/A 0.389±0.17 2.049±0.29 0.791±0.00
ENST00000379022 N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A 0.361±0.00
ENST00000379024 N/A N/A N/A 7.745±0.00 N/A 0.154±0.00 0.039±0.00 N/A N/A 0.082±0.00 N/A 0.195±0.02 0.639±0.00 0.152±0.00
ENST00000379028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413765 N/A N/A N/A 14.100±5.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415105 N/A N/A N/A N/A N/A 0.575±0.00 N/A N/A N/A N/A N/A N/A N/A 1.253±0.00
ENST00000417701 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A 0.589±0.00 N/A N/A
ENST00000418239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425651 N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A
ENST00000442580 N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000445634 N/A N/A N/A N/A N/A N/A N/A 0.554±0.00 N/A N/A 0.258±0.00 1.475±0.00 N/A 1.680±0.00
ENST00000456431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465585 N/A N/A N/A N/A 0.895±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522550 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A 0.058±0.00 N/A 0.006±0.00 N/A N/A N/A
ENST00000613830 N/A N/A 0.681±0.00 N/A 0.150±0.00 N/A 0.023±0.00 N/A N/A N/A 0.024±0.00 N/A N/A N/A
ENSG00000128590 ENST00000249356 10.439±0.00 6.810±0.00 4.756±0.00 11.981±2.42 10.073±0.18 10.804±4.11 10.941±4.70 27.562±9.00 12.253±5.51 20.542±10.76 12.956±11.16 11.059±2.84 19.292±4.00 25.643±0.95
ENST00000465725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135241 ENST00000257694 N/A N/A N/A N/A 3.919±0.00 N/A N/A N/A N/A N/A N/A 2.379±0.00 3.808±0.84 N/A
ENST00000415498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422087 N/A N/A N/A N/A N/A N/A N/A 3.456±0.00 N/A N/A N/A N/A N/A N/A
ENST00000426128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436062 N/A 2.981±0.00 N/A 4.162±0.00 2.372±0.00 3.014±0.00 3.201±0.55 N/A 3.370±0.00 4.019±0.00 N/A 4.522±0.37 9.709±0.00 6.347±0.00
ENST00000453085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.978±0.00 N/A N/A N/A
ENST00000453144 N/A N/A 1.944±0.00 5.008±1.05 3.205±0.00 6.959±0.00 4.683±0.00 N/A 4.082±0.00 9.734±0.00 N/A 4.354±0.00 N/A N/A
ENST00000462466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225647 ENST00000440208 N/A N/A N/A 0.311±0.00 N/A N/A N/A N/A N/A N/A N/A 0.368±0.00 N/A 0.244±0.12
ENSG00000231006 ENST00000457119 0.245±0.00 0.404±0.00 1.019±0.00 0.257±0.16 0.160±0.04 0.368±0.04 0.358±0.19 0.149±0.00 0.091±0.03 0.276±0.19 0.227±0.00 0.227±0.21 0.514±0.00 0.136±0.01
ENSG00000266112 ENST00000582403 N/A N/A N/A N/A N/A N/A N/A 0.650±0.00 N/A N/A N/A 24.757±0.00 N/A 0.577±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014905 ENSMUST00000015049 3.113±1.14 4.454±0.82 7.242±1.21 5.567±3.86 3.386±0.77 4.126±0.42 4.607±1.13 4.368±1.62 6.644±2.35 5.166±1.76 13.848±1.74 7.275±6.70 19.709±6.83 14.643±4.10
ENSMUSG00000020598 ENSMUST00000020939 0.262±0.00 0.353±0.00 N/A 12.616±2.14 0.141±0.07 0.070±0.03 0.029±0.00 0.203±0.03 0.010±0.00 N/A N/A N/A N/A 0.040±0.00
ENSMUST00000110748 0.124±0.03 0.100±0.05 0.033±0.01 2.910±0.08 0.121±0.05 0.076±0.03 0.023±0.01 0.225±0.12 0.015±0.01 1.083±0.63 0.040±0.01 2.912±2.15 0.687±0.68 0.113±0.04
ENSMUSG00000036257 ENSMUST00000043082 19.119±5.28 6.135±2.42 16.839±0.20 15.943±3.04 12.025±5.08 4.657±1.30 15.090±2.83 12.169±2.97 11.343±4.49 8.737±1.44 26.921±2.79 9.343±4.32 13.173±5.03 10.689±3.03
ENSMUST00000122902 N/A N/A N/A 6.710±0.00 N/A N/A N/A N/A N/A N/A N/A 7.113±0.00 3.957±0.00 1.614±0.00
ENSMUST00000125757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143771 N/A N/A N/A 3.826±0.00 N/A N/A N/A N/A N/A N/A 3.824±0.00 6.140±0.24 5.646±0.00 N/A
ENSMUST00000156082 13.536±1.40 9.030±0.80 N/A N/A 12.186±2.00 4.276±0.97 N/A 7.463±0.29 7.149±0.65 8.177±1.38 N/A 8.484±2.44 N/A N/A

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