C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuronal cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020598 Nrcam 10090 + 12:44328885-44601846 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020939 Nrcam-201 44328885-44601846 protein_coding
  ENSMUST00000110748 Nrcam-202 44328885-44601846 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020939ENSMUST00000110748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020939 0.262±0.00 0.353±0.00 N/A 12.616±2.14 0.141±0.07 0.070±0.03 0.029±0.00 0.203±0.03 0.010±0.00 N/A N/A N/A N/A 0.040±0.00
ENSMUST00000110748 0.124±0.03 0.100±0.05 0.033±0.01 2.910±0.08 0.121±0.05 0.076±0.03 0.023±0.01 0.225±0.12 0.015±0.01 1.083±0.63 0.040±0.01 2.912±2.15 0.687±0.68 0.113±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PF CIL_0008PF_0002 VISTA 12:44102519-44705770
CIL_0008CE CIL_0008CE_0002 VISTA 12:44102792-44705590
CIL_00057O CIL_00057O_0002 CGP 12:44221370-44601846

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007411 IDA axon guidance
GO:0007417 IDA central nervous system development
GO:0008104 IDA protein localization
GO:0010975 IMP regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0019227 IMP neuronal action potential propagation
GO:0030424 IDA axon
GO:0030506 ISS ankyrin binding
GO:0031290 IMP retinal ganglion cell axon guidance
GO:0034113 IGI heterotypic cell-cell adhesion
GO:0045162 ISS clustering of voltage-gated sodium channels
GO:0045202 IDA synapse
GO:0086080 IGI protein binding involved in heterotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006396 nrcama neuronal cell adhesion molecule a protein_coding Danio_rerio
ENSG00000091129 NRCAM neuronal cell adhesion molecule protein_coding Homo_sapiens

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