C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000351718 NRCAM-003 ENSG00000091129 9606 - 7:108147662-108456339 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000351718
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000351718 1.990±0.00 0.133±0.00 6.033±0.00 0.547±0.27 0.363±0.00 3.129±0.00 0.046±0.00 0.243±0.00 0.389±0.17 2.049±0.29 0.791±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0001 VISTA 7:107646717-108248447
CIL_0008PF CIL_0008PF_0001 VISTA 7:108074195-108676805
CIL_0008CE CIL_0008CE_0001 VISTA 7:108074285-108676732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEP angiogenesis
GO:0001764 NAS neuron migration
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0007409 NAS axonogenesis
GO:0007411 TAS axon guidance
GO:0007413 NAS axonal fasciculation
GO:0007416 TAS synapse assembly
GO:0007417 NAS central nervous system development
GO:0009897 NAS external side of plasma membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0030506 IDA ankyrin binding
GO:0030516 NAS regulation of axon extension
GO:0043005 NAS neuron projection
GO:0043194 ISS axon initial segment
GO:0045162 IDA clustering of voltage-gated sodium channels
GO:0045666 NAS positive regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110748 Nrcam-202 protein_coding Mus_musculus 0 4800
ENSMUST00000020939 Nrcam-201 protein_coding Mus_musculus 0 2326

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