C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 22, member 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092096 SLC22A17 9606 - 14:23346306-23352912 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000206544 SLC22A17-003 23346318-23352551 protein_coding
  ENST00000354772 SLC22A17-001 23346306-23352912 protein_coding
  ENST00000397260 SLC22A17-005 23346314-23352860 protein_coding
  ENST00000397267 SLC22A17-201 23346314-23352912 protein_coding
  ENST00000473917 SLC22A17-004 23346324-23349762 retained_intron
  ENST00000474057 SLC22A17-002 23346316-23352908 processed_transcript
  ENST00000474774 SLC22A17-006 23347159-23348221 processed_transcript
  ENST00000556803 SLC22A17-007 23350919-23352043 retained_intron
  ENST00000557699 SLC22A17-008 23348627-23352576 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000206544ENST00000354772ENST00000397260ENST00000397267ENST00000473917ENST00000474057ENST00000556803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000206544 N/A N/A N/A N/A N/A N/A 0.588±0.00 0.098±0.00 N/A N/A N/A 4.107±2.42 N/A N/A
ENST00000354772 3.384±0.00 13.245±0.00 N/A 87.217±52.00 5.718±0.00 10.313±9.59 1.884±1.46 6.369±0.00 1.707±1.15 5.975±4.57 0.554±0.00 13.723±10.11 8.406±0.81 12.100±1.98
ENST00000397260 1.501±0.00 4.453±0.00 2.712±0.00 40.416±0.00 2.411±0.00 7.784±0.00 1.423±0.00 3.879±0.00 0.649±0.00 4.404±0.00 1.644±0.00 N/A N/A 11.381±0.00
ENST00000397267 N/A N/A N/A 5.072±0.00 N/A 3.604±0.00 N/A 6.268±0.00 N/A N/A N/A 2.472±1.58 1.105±0.00 3.306±0.00
ENST00000473917 N/A N/A N/A N/A 0.191±0.00 N/A 0.648±0.00 N/A N/A N/A 1.156±0.00 N/A N/A N/A
ENST00000474057 N/A N/A N/A N/A N/A N/A 0.223±0.00 3.021±0.00 N/A 4.513±0.00 N/A N/A N/A N/A
ENST00000556803 N/A N/A 1.541±0.00 N/A N/A N/A N/A 0.253±0.00 0.727±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0001 VISTA 14:23078458-23681621
CIL_0009BW CIL_0009BW_0001 VISTA 14:23137378-23739005
CIL_0008Q4 CIL_0008Q4_0001 VISTA 14:23138150-23738498
CIL_0008QH CIL_0008QH_0001 VISTA 14:23142404-23743714
CIL_00051C CIL_00051C_0001 CGP 14:23321289-23352912
CIL_00051E CIL_00051E_0001 CGP 14:23346306-23365752

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004888 ISS transmembrane signaling receptor activity
GO:0005515 IEA protein binding
GO:0005773 IEA vacuole
GO:0005887 IDA integral component of plasma membrane
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0015891 ISS siderophore transport
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0031301 IDA integral component of organelle membrane
GO:0055072 IEA iron ion homeostasis
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077218 SLC22A17 (1 of 2) solute carrier family 22, member 17 protein_coding Danio_rerio
ENSDARG00000088468 SLC22A17 (2 of 2) solute carrier family 22, member 17 protein_coding Danio_rerio
ENSMUSG00000022199 Slc22a17 solute carrier family 22 (organic cation transporter), member 17 protein_coding Mus_musculus

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