C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 31
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092098 RNF31 9606 + 14:24146683-24160661 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324103 RNF31-001 24147379-24160661 protein_coding
  ENST00000483895 RNF31-003 24157291-24160605 nonsense_mediated_decay
  ENST00000491351 RNF31-002 24147500-24160660 nonsense_mediated_decay
  ENST00000557878 RNF31-009 24146722-24149385 processed_transcript
  ENST00000557991 RNF31-011 24146751-24148656 protein_coding
  ENST00000558452 RNF31-020 24155622-24157908 retained_intron
  ENST00000558634 RNF31-008 24146686-24148684 processed_transcript
  ENST00000558907 RNF31-018 24147976-24150291 nonsense_mediated_decay
  ENST00000559071 RNF31-006 24151001-24160655 retained_intron
  ENST00000559260 RNF31-015 24147500-24149425 protein_coding
  ENST00000559275 RNF31-004 24146887-24160659 protein_coding
  ENST00000559308 RNF31-026 24146685-24149487 protein_coding
  ENST00000559438 RNF31-013 24146875-24149431 processed_transcript
  ENST00000559449 RNF31-022 24155667-24160654 nonsense_mediated_decay
  ENST00000559491 RNF31-024 24159788-24160655 retained_intron
  ENST00000559533 RNF31-010 24146740-24150254 protein_coding
  ENST00000559583 RNF31-017 24148448-24150247 processed_transcript
  ENST00000559719 RNF31-021 24157520-24160655 protein_coding
  ENST00000559882 RNF31-025 24147500-24148334 processed_transcript
  ENST00000560071 RNF31-014 24146877-24149511 protein_coding
  ENST00000560342 RNF31-016 24147716-24149150 retained_intron
  ENST00000560631 RNF31-023 24160111-24160542 retained_intron
  ENST00000560754 RNF31-019 24154960-24157335 protein_coding
  ENST00000560787 RNF31-005 24148082-24160654 protein_coding
  ENST00000560875 RNF31-007 24146683-24147867 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000324103ENST00000559275ENST00000560787
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000324103 7.174±0.00 1.327±0.00 16.615±14.92 9.987±0.00 5.150±4.27 2.541±0.00 4.120±0.00 27.037±0.00 21.387±0.00 12.238±1.16 24.879±8.57
ENST00000559275 N/A N/A N/A N/A N/A N/A N/A N/A 3.164±0.00 N/A N/A
ENST00000560787 N/A N/A N/A N/A N/A N/A N/A 11.202±6.96 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K8 CIL_0001K8_0002 CGP 14:24138959-24147570
CIL_00031B CIL_00031B_0001 CGP 14:24143362-24160661

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IEA:IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009898 ISS cytoplasmic side of plasma membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0023035 ISS CD40 signaling pathway
GO:0031625 IPI ubiquitin protein ligase binding
GO:0035631 ISS CD40 receptor complex
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 IDA ubiquitin binding
GO:0050852 IDA T cell receptor signaling pathway
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0071797 IEA:IDA LUBAC complex
GO:0097039 IDA protein linear polyubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089229 RNF31 protein_coding Danio_rerio
ENSDARG00000090770 CU693487.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000047098 Rnf31 ring finger protein 31 protein_coding Mus_musculus

Loading