C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324103 RNF31-001 ENSG00000092098 9606 + 14:24147379-24160661 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000324103
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000324103 7.174±0.00 1.327±0.00 16.615±14.92 9.987±0.00 5.150±4.27 2.541±0.00 4.120±0.00 27.037±0.00 21.387±0.00 12.238±1.16 24.879±8.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K8 CIL_0001K8_0002 CGP 14:24138959-24147570
CIL_00031B CIL_00031B_0001 CGP 14:24143362-24160661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IEA:IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009898 ISS cytoplasmic side of plasma membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0023035 ISS CD40 signaling pathway
GO:0031625 IPI ubiquitin protein ligase binding
GO:0035631 ISS CD40 receptor complex
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 IDA ubiquitin binding
GO:0050852 IDA T cell receptor signaling pathway
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0071797 IEA:IDA LUBAC complex
GO:0097039 IDA protein linear polyubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019443 Rnf31-001 protein_coding Mus_musculus 0 3518
ENSMUST00000140178 Rnf31-005 protein_coding Mus_musculus 0 1914
ENSMUST00000137296 Rnf31-002 nonsense_mediated_decay Mus_musculus 0 1417
ENSMUST00000133903 Rnf31-004 retained_intron Mus_musculus 0 278

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