C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IX, alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092758 COL9A3 9606 + 20:62816244-62841159 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343916 COL9A3-001 62817062-62841159 protein_coding
  ENST00000452372 COL9A3-005 62817811-62825870 protein_coding
  ENST00000462700 COL9A3-007 62832887-62841159 processed_transcript
  ENST00000463487 COL9A3-015 62824422-62829499 processed_transcript
  ENST00000466192 COL9A3-010 62831140-62841144 retained_intron
  ENST00000466532 COL9A3-014 62836922-62840658 processed_transcript
  ENST00000467819 COL9A3-003 62836419-62841159 processed_transcript
  ENST00000469802 COL9A3-006 62832850-62837168 retained_intron
  ENST00000469852 COL9A3-002 62831571-62836157 retained_intron
  ENST00000472880 COL9A3-013 62832845-62836659 retained_intron
  ENST00000477612 COL9A3-009 62816244-62825030 processed_transcript
  ENST00000481800 COL9A3-012 62831728-62836127 retained_intron
  ENST00000489045 COL9A3-004 62817443-62826820 processed_transcript
  ENST00000490398 COL9A3-011 62831658-62836251 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverLungOvaryPlacentaENST00000343916ENST00000467819
Transcript ID Adrenal Brain Colon Heart Liver Lung Ovary Placenta
ENST00000343916 1.357±0.00 11.111±0.00 2.780±0.00 N/A N/A 1.313±0.00 8.472±0.00 3.763±0.00
ENST00000467819 N/A 8.613±0.00 N/A 0.321±0.00 0.829±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0001 CGP 20:62804835-62841159
CIL_0001O1 CIL_0001O1_0001 CGP 20:62816244-62861763

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005594 IDA collagen type IX trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 IC extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037845 col9a3 collagen, type IX, alpha 3 protein_coding Danio_rerio
ENSMUSG00000027570 Col9a3 collagen, type IX, alpha 3 protein_coding Mus_musculus

Loading