C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001O1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000092758-ENSG00000101190 CGP 9606 20:62816244-62861763
GeneTranscriptPositionBiotype
ENSG00000092758 (COL9A3)
collagen, type IX, alpha 3 		ENST00000343916 (COL9A3-001) 62817062-62841159 protein_coding
ENST00000452372 (COL9A3-005) 62817811-62825870 protein_coding
ENST00000462700 (COL9A3-007) 62832887-62841159 processed_transcript
ENST00000463487 (COL9A3-015) 62824422-62829499 processed_transcript
ENST00000466192 (COL9A3-010) 62831140-62841144 retained_intron
ENST00000466532 (COL9A3-014) 62836922-62840658 processed_transcript
ENST00000467819 (COL9A3-003) 62836419-62841159 processed_transcript
ENST00000469802 (COL9A3-006) 62832850-62837168 retained_intron
ENST00000469852 (COL9A3-002) 62831571-62836157 retained_intron
ENST00000472880 (COL9A3-013) 62832845-62836659 retained_intron
ENST00000477612 (COL9A3-009) 62816244-62825030 processed_transcript
ENST00000481800 (COL9A3-012) 62831728-62836127 retained_intron
ENST00000489045 (COL9A3-004) 62817443-62826820 processed_transcript
ENST00000490398 (COL9A3-011) 62831658-62836251 retained_intron
ENSG00000101190 (TCFL5)
transcription factor-like 5 (basic helix-loop-helix) 		ENST00000217162 (TCFL5-201) 62845138-62861763 protein_coding
ENST00000335351 (TCFL5-001) 62841115-62861763 protein_coding
CIL_0001O1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027570-ENSMUSG00000038932 CGP 10090 2:180597790-180642708
GeneTranscriptPositionBiotype
ENSMUSG00000027570 (Col9a3)
collagen, type IX, alpha 3 		ENSMUST00000103059 (Col9a3-201) 180598222-180622185 protein_coding
ENSMUST00000129090 (Col9a3-002) 180603185-180613415 retained_intron
ENSMUST00000132527 (Col9a3-001) 180597790-180622189 protein_coding
ENSMUST00000141056 (Col9a3-003) 180598806-180605777 retained_intron
ENSMUST00000165224 (Col9a3-005) 180616266-180621602 retained_intron
ENSMUST00000165879 (Col9a3-004) 180614113-180621298 retained_intron
ENSMUSG00000038932 (Tcfl5)
transcription factor-like 5 (basic helix-loop-helix) 		ENSMUST00000037877 (Tcfl5-001) 180621956-180642708 protein_coding
ENSMUST00000131881 (Tcfl5-002) 180637466-180642347 retained_intron
ENSMUST00000161425 (Tcfl5-003) 180635254-180642589 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001O1_0001ENSG00000092758ENST00000343916ENST00000452372ENST00000462700ENST00000463487ENST00000466192ENST00000466532ENST00000467819ENST00000469802ENST00000469852ENST00000472880ENST00000477612ENST00000481800ENST00000489045ENST00000490398ENSG00000101190ENST00000217162ENST00000335351CIL_0001O1_0002ENSMUSG00000027570ENSMUST00000103059ENSMUST00000129090ENSMUST00000132527ENSMUST00000141056ENSMUST00000165224ENSMUST00000165879ENSMUSG00000038932ENSMUST00000037877ENSMUST00000131881ENSMUST00000161425
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001O1_0001ENSG00000092758ENST00000343916ENST00000467819ENSG00000101190ENST00000217162ENST00000335351CIL_0001O1_0002ENSMUSG00000027570ENSMUST00000103059ENSMUST00000129090ENSMUST00000132527ENSMUST00000141056ENSMUST00000165224ENSMUST00000165879ENSMUSG00000038932ENSMUST00000037877ENSMUST00000131881ENSMUST00000161425
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092758 ENST00000343916 N/A 1.357±0.00 N/A 11.111±0.00 N/A 2.780±0.00 N/A N/A N/A 1.313±0.00 N/A 8.472±0.00 3.763±0.00 N/A
ENST00000452372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467819 N/A N/A N/A 8.613±0.00 N/A N/A 0.321±0.00 N/A 0.829±0.00 N/A N/A N/A N/A N/A
ENST00000469802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101190 ENST00000217162 N/A N/A N/A N/A N/A 0.420±0.00 0.738±0.00 1.048±0.00 0.444±0.00 0.571±0.00 N/A N/A 3.642±0.00 N/A
ENST00000335351 6.175±0.00 N/A N/A 7.765±2.69 4.902±0.00 2.351±2.18 1.088±0.68 2.284±0.95 1.165±0.09 1.319±0.25 1.614±0.11 7.510±3.50 4.297±2.50 66.340±17.69
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027570 ENSMUST00000103059 0.127±0.07 0.029±0.00 0.289±0.00 11.349±0.56 0.527±0.23 0.141±0.08 0.095±0.03 0.044±0.02 0.334±0.23 0.222±0.05 0.070±0.03 0.277±0.16 3.296±2.35 N/A
ENSMUST00000129090 0.073±0.01 0.086±0.05 N/A N/A 0.576±0.00 0.078±0.02 0.099±0.00 0.025±0.00 0.046±0.00 N/A 0.080±0.00 0.255±0.07 0.499±0.00 N/A
ENSMUST00000132527 0.142±0.00 0.071±0.02 N/A N/A N/A 0.202±0.00 N/A N/A N/A N/A N/A 0.182±0.06 N/A N/A
ENSMUST00000141056 N/A N/A N/A N/A N/A 0.320±0.12 N/A N/A 0.062±0.01 N/A N/A N/A N/A N/A
ENSMUST00000165224 N/A 0.185±0.03 N/A N/A 1.609±0.00 0.228±0.09 N/A 0.229±0.09 0.063±0.04 0.682±0.24 0.126±0.00 0.562±0.13 N/A N/A
ENSMUST00000165879 0.289±0.00 0.193±0.11 N/A N/A 1.100±0.13 0.396±0.17 0.141±0.02 0.145±0.04 0.570±0.00 0.268±0.03 0.165±0.10 0.996±0.44 N/A N/A
ENSMUSG00000038932 ENSMUST00000037877 N/A N/A N/A N/A N/A N/A 0.099±0.02 0.037±0.00 0.151±0.09 0.082±0.00 0.033±0.01 0.184±0.08 0.948±0.47 84.930±26.05
ENSMUST00000131881 N/A 0.178±0.04 N/A N/A N/A N/A 0.056±0.00 0.044±0.00 N/A N/A N/A 0.257±0.14 N/A 118.074±0.00
ENSMUST00000161425 N/A 0.074±0.00 N/A N/A N/A N/A 0.060±0.00 0.040±0.00 N/A N/A 0.062±0.03 0.331±0.00 3.511±0.49 456.286±0.00

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