C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IX, alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027570 Col9a3 10090 + 2:180597790-180622189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103059 Col9a3-201 180598222-180622185 protein_coding
  ENSMUST00000129090 Col9a3-002 180603185-180613415 retained_intron
  ENSMUST00000132527 Col9a3-001 180597790-180622189 protein_coding
  ENSMUST00000141056 Col9a3-003 180598806-180605777 retained_intron
  ENSMUST00000165224 Col9a3-005 180616266-180621602 retained_intron
  ENSMUST00000165879 Col9a3-004 180614113-180621298 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000103059ENSMUST00000129090ENSMUST00000132527ENSMUST00000141056ENSMUST00000165224ENSMUST00000165879
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000103059 0.127±0.07 0.029±0.00 0.289±0.00 11.349±0.56 0.527±0.23 0.141±0.08 0.095±0.03 0.044±0.02 0.334±0.23 0.222±0.05 0.070±0.03 0.277±0.16 3.296±2.35
ENSMUST00000129090 0.073±0.01 0.086±0.05 N/A N/A 0.576±0.00 0.078±0.02 0.099±0.00 0.025±0.00 0.046±0.00 N/A 0.080±0.00 0.255±0.07 0.499±0.00
ENSMUST00000132527 0.142±0.00 0.071±0.02 N/A N/A N/A 0.202±0.00 N/A N/A N/A N/A N/A 0.182±0.06 N/A
ENSMUST00000141056 N/A N/A N/A N/A N/A 0.320±0.12 N/A N/A 0.062±0.01 N/A N/A N/A N/A
ENSMUST00000165224 N/A 0.185±0.03 N/A N/A 1.609±0.00 0.228±0.09 N/A 0.229±0.09 0.063±0.04 0.682±0.24 0.126±0.00 0.562±0.13 N/A
ENSMUST00000165879 0.289±0.00 0.193±0.11 N/A N/A 1.100±0.13 0.396±0.17 0.141±0.02 0.145±0.04 0.570±0.00 0.268±0.03 0.165±0.10 0.996±0.44 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0002 CGP 2:180589245-180622189
CIL_0001O1 CIL_0001O1_0002 CGP 2:180597790-180642708

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005594 IEA collagen type IX trimer
GO:0008584 IEP male gonad development
GO:0008585 IEP female gonad development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037845 col9a3 collagen, type IX, alpha 3 protein_coding Danio_rerio
ENSG00000092758 COL9A3 collagen, type IX, alpha 3 protein_coding Homo_sapiens

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