C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 50kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000093000 NUP50 9606 + 22:45163841-45188015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347635 NUP50-001 45163841-45188015 protein_coding
  ENST00000396096 NUP50-003 45164646-45184830 protein_coding
  ENST00000407019 NUP50-002 45163986-45184830 protein_coding
  ENST00000417702 NUP50-007 45163997-45171639 protein_coding
  ENST00000419387 NUP50-016 45168166-45178900 nonsense_mediated_decay
  ENST00000422489 NUP50-017 45168171-45183515 protein_coding
  ENST00000424634 NUP50-005 45163987-45171667 protein_coding
  ENST00000430547 NUP50-010 45164000-45178314 protein_coding
  ENST00000432340 NUP50-013 45164680-45168190 protein_coding
  ENST00000434760 NUP50-009 45164000-45176006 nonsense_mediated_decay
  ENST00000445721 NUP50-011 45164608-45168207 protein_coding
  ENST00000461194 NUP50-014 45164666-45171143 processed_transcript
  ENST00000461437 NUP50-008 45163999-45171019 processed_transcript
  ENST00000469163 NUP50-004 45177699-45185624 retained_intron
  ENST00000484186 NUP50-015 45164282-45171746 processed_transcript
  ENST00000486184 NUP50-018 45171050-45178430 processed_transcript
  ENST00000491860 NUP50-019 45175818-45178467 processed_transcript
  ENST00000493456 NUP50-012 45164635-45184504 processed_transcript
  ENST00000497960 NUP50-006 45163997-45172206 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347635ENST00000396096ENST00000422489ENST00000434760
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347635 2.766±0.00 1.326±0.00 3.019±1.44 0.873±0.03 2.662±1.07 1.078±0.44 1.654±0.00 4.429±0.00 1.124±0.00 0.841±0.00 4.303±1.99 3.325±0.18 4.724±0.68
ENST00000396096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.455±0.00
ENST00000422489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.240±0.00 N/A
ENST00000434760 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.323±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V4 CIL_0000V4_0002 CGP 22:45163841-45240769

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA nuclear membrane
GO:0044281 TAS small molecule metabolic process
GO:0046907 IEA intracellular transport
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017454 nup50 nucleoporin 50 protein_coding Danio_rerio
ENSMUSG00000016619 Nup50 nucleoporin 50 protein_coding Mus_musculus
ENSMUSG00000072878 1700123L14Rik RIKEN cDNA 1700123L14 gene protein_coding Mus_musculus

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