C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 50kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347635 NUP50-001 ENSG00000093000 9606 + 22:45163841-45188015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347635
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347635 2.766±0.00 1.326±0.00 3.019±1.44 0.873±0.03 2.662±1.07 1.078±0.44 1.654±0.00 4.429±0.00 1.124±0.00 0.841±0.00 4.303±1.99 3.325±0.18 4.724±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V4 CIL_0000V4_0002 CGP 22:45163841-45240769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA nuclear membrane
GO:0044281 TAS small molecule metabolic process
GO:0046907 IEA intracellular transport
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165443 Nup50-201 protein_coding Mus_musculus 6e-27 128

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