C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000V4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017454-ENSDARG00000068830 CGP 7955 4:60246098-60301556
GeneTranscriptPositionBiotype
ENSDARG00000017454 (nup50)
nucleoporin 50 		ENSDART00000004739 (nup50-001) 60246098-60264839 protein_coding
ENSDART00000148575 (nup50-002) 60246182-60260864 processed_transcript
ENSDARG00000068830 (zgc:172139)
zgc:172139 		ENSDART00000150692 (zgc:172139-001) 60272405-60301556 protein_coding
CIL_0000V4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000093000-ENSG00000100364 CGP 9606 22:45163841-45240769
GeneTranscriptPositionBiotype
ENSG00000093000 (NUP50)
nucleoporin 50kDa 		ENST00000347635 (NUP50-001) 45163841-45188015 protein_coding
ENST00000396096 (NUP50-003) 45164646-45184830 protein_coding
ENST00000407019 (NUP50-002) 45163986-45184830 protein_coding
ENST00000417702 (NUP50-007) 45163997-45171639 protein_coding
ENST00000419387 (NUP50-016) 45168166-45178900 nonsense_mediated_decay
ENST00000422489 (NUP50-017) 45168171-45183515 protein_coding
ENST00000424634 (NUP50-005) 45163987-45171667 protein_coding
ENST00000430547 (NUP50-010) 45164000-45178314 protein_coding
ENST00000432340 (NUP50-013) 45164680-45168190 protein_coding
ENST00000434760 (NUP50-009) 45164000-45176006 nonsense_mediated_decay
ENST00000445721 (NUP50-011) 45164608-45168207 protein_coding
ENST00000461194 (NUP50-014) 45164666-45171143 processed_transcript
ENST00000461437 (NUP50-008) 45163999-45171019 processed_transcript
ENST00000469163 (NUP50-004) 45177699-45185624 retained_intron
ENST00000484186 (NUP50-015) 45164282-45171746 processed_transcript
ENST00000486184 (NUP50-018) 45171050-45178430 processed_transcript
ENST00000491860 (NUP50-019) 45175818-45178467 processed_transcript
ENST00000493456 (NUP50-012) 45164635-45184504 processed_transcript
ENST00000497960 (NUP50-006) 45163997-45172206 retained_intron
ENSG00000100364 (KIAA0930)
KIAA0930 		ENST00000251993 (KIAA0930-004) 45195828-45212488 protein_coding
ENST00000336156 (KIAA0930-001) 45190338-45240769 protein_coding
ENST00000391627 (KIAA0930-002) 45195828-45226903 protein_coding
ENST00000414854 (KIAA0930-007) 45205221-45236277 protein_coding
ENST00000417906 (KIAA0930-006) 45205884-45240742 nonsense_mediated_decay
ENST00000423262 (KIAA0930-005) 45195828-45205849 protein_coding
ENST00000424508 (KIAA0930-009) 45205223-45213499 protein_coding
ENST00000440039 (KIAA0930-012) 45203131-45212081 nonsense_mediated_decay
ENST00000474515 (KIAA0930-014) 45196964-45202684 processed_transcript
ENST00000483374 (KIAA0930-016) 45196702-45198033 retained_intron
ENST00000486640 (KIAA0930-008) 45205260-45235413 processed_transcript
ENST00000488038 (KIAA0930-003) 45196038-45212457 retained_intron
ENST00000492273 (KIAA0930-011) 45211335-45212417 protein_coding
ENST00000493003 (KIAA0930-013) 45197106-45202715 processed_transcript
ENST00000496226 (KIAA0930-010) 45211334-45212445 protein_coding
ENST00000498418 (KIAA0930-015) 45196749-45200209 retained_intron
ENSG00000221598 (MIR1249)
microRNA 1249 		ENST00000408671 (MIR1249-201) 45200938-45201049 miRNA
ENSG00000273353 (CTA-268H5.12)
 ENST00000610217 (CTA-268H5.12-001) 45178990-45179310 sense_intronic
CIL_0000V4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016619-ENSMUSG00000036046 CGP 10090 15:84923428-84988551
GeneTranscriptPositionBiotype
ENSMUSG00000016619 (Nup50)
nucleoporin 50 		ENSMUST00000165443 (Nup50-201) 84923428-84942955 protein_coding
ENSMUSG00000036046 (5031439G07Rik)
RIKEN cDNA 5031439G07 gene 		ENSMUST00000047144 (5031439G07Rik-001) 84943936-84988000 protein_coding
ENSMUST00000124308 (5031439G07Rik-002) 84948000-84960983 retained_intron
ENSMUST00000165743 (5031439G07Rik-201) 84945720-84987971 protein_coding
ENSMUST00000170863 (5031439G07Rik-003) 84955688-84988551 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V4_0001ENSDARG00000017454ENSDART00000004739ENSDART00000148575ENSDARG00000068830ENSDART00000150692CIL_0000V4_0002ENSG00000093000ENST00000347635ENST00000396096ENST00000407019ENST00000417702ENST00000419387ENST00000422489ENST00000424634ENST00000430547ENST00000432340ENST00000434760ENST00000445721ENST00000461194ENST00000461437ENST00000469163ENST00000484186ENST00000486184ENST00000491860ENST00000493456ENST00000497960ENSG00000100364ENST00000251993ENST00000336156ENST00000391627ENST00000414854ENST00000417906ENST00000423262ENST00000424508ENST00000440039ENST00000474515ENST00000483374ENST00000486640ENST00000488038ENST00000492273ENST00000493003ENST00000496226ENST00000498418ENSG00000221598ENST00000408671ENSG00000273353ENST00000610217CIL_0000V4_0003ENSMUSG00000016619ENSMUST00000165443ENSMUSG00000036046ENSMUST00000047144ENSMUST00000124308ENSMUST00000165743ENSMUST00000170863
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V4_0001ENSDARG00000017454ENSDART00000004739ENSDARG00000068830ENSDART00000150692CIL_0000V4_0002ENSG00000093000ENST00000347635ENST00000396096ENST00000422489ENST00000434760ENSG00000100364ENST00000251993ENST00000336156ENST00000391627ENST00000414854ENST00000423262ENST00000474515ENST00000486640ENST00000488038ENST00000493003ENST00000498418ENSG00000221598ENST00000408671ENSG00000273353ENST00000610217CIL_0000V4_0003ENSMUSG00000016619ENSMUST00000165443ENSMUSG00000036046ENSMUST00000047144ENSMUST00000124308ENSMUST00000165743
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017454 ENSDART00000004739 N/A N/A N/A 12.115±12.39 N/A N/A 10.003±0.00 7.685±0.00 6.668±0.00 N/A 6.475±0.00 N/A N/A N/A
ENSDART00000148575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000068830 ENSDART00000150692 N/A N/A N/A 2.464±0.97 N/A N/A 1.542±0.65 1.549±0.00 1.007±0.00 N/A 1.306±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000093000 ENST00000347635 2.766±0.00 N/A 1.326±0.00 3.019±1.44 0.873±0.03 2.662±1.07 1.078±0.44 1.654±0.00 4.429±0.00 1.124±0.00 0.841±0.00 4.303±1.99 3.325±0.18 4.724±0.68
ENST00000396096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.455±0.00
ENST00000407019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.240±0.00 N/A
ENST00000424634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.323±0.00 N/A N/A N/A
ENST00000445721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100364 ENST00000251993 N/A N/A N/A 5.355±0.00 N/A N/A N/A N/A N/A 1.421±0.00 N/A 5.936±4.21 8.872±0.00 12.102±0.00
ENST00000336156 1.979±0.00 3.288±0.00 N/A 4.961±0.00 2.106±1.48 1.041±0.80 1.085±0.00 1.454±0.42 0.976±0.12 1.136±0.53 0.876±0.69 3.569±1.32 1.313±0.18 3.206±0.31
ENST00000391627 N/A 7.486±0.00 N/A 10.278±0.00 N/A N/A 5.350±0.00 8.558±0.00 14.567±0.00 5.514±0.00 13.432±0.00 9.775±2.56 13.318±3.47 N/A
ENST00000414854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.329±0.00 N/A N/A N/A
ENST00000417906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423262 16.099±0.00 20.552±0.00 1.551±0.00 14.115±0.00 17.466±0.00 5.827±5.12 N/A 8.426±0.00 6.716±0.00 3.302±2.54 4.351±0.00 10.651±1.38 7.325±0.84 21.265±0.00
ENST00000424508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474515 N/A N/A N/A N/A 6.349±0.00 N/A N/A N/A N/A N/A N/A 38.155±0.00 N/A N/A
ENST00000483374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486640 N/A N/A N/A N/A N/A 2.321±0.00 N/A N/A 7.116±0.00 N/A N/A N/A N/A N/A
ENST00000488038 12.395±0.00 N/A N/A 12.839±8.31 11.762±9.79 4.310±3.48 0.801±0.00 N/A 3.381±0.00 5.210±0.00 2.526±0.61 9.091±5.75 4.152±0.65 10.362±0.00
ENST00000492273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493003 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.805±0.00 N/A N/A N/A N/A
ENST00000496226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498418 N/A N/A N/A N/A N/A 2.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221598 ENST00000408671 N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.169±0.00 N/A N/A
ENSG00000273353 ENST00000610217 0.144±0.00 N/A N/A 0.186±0.00 N/A N/A N/A N/A 0.230±0.00 0.357±0.00 N/A 0.174±0.00 N/A 0.124±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016619 ENSMUST00000165443 4.878±1.20 5.728±0.43 5.031±1.26 7.392±1.20 4.335±0.72 5.682±0.60 1.760±0.40 6.412±0.32 6.864±3.86 4.902±0.25 2.765±0.35 6.528±2.25 14.344±2.58 12.965±5.60
ENSMUSG00000036046 ENSMUST00000047144 5.574±1.43 6.577±0.86 9.518±0.54 12.424±5.62 9.272±0.60 5.361±0.80 5.569±0.63 8.863±0.96 2.602±1.52 6.689±0.51 28.973±4.87 10.372±1.80 3.382±0.36 N/A
ENSMUST00000124308 1.645±0.39 1.536±0.14 1.688±0.27 5.426±3.27 2.377±0.25 1.017±0.07 N/A N/A 0.345±0.00 1.393±0.14 N/A 2.961±0.19 2.865±0.47 3.298±0.00
ENSMUST00000165743 3.764±0.41 3.082±1.18 N/A 6.237±0.00 5.670±1.25 2.438±1.12 N/A 4.132±0.86 1.011±0.54 2.860±0.36 14.389±2.02 6.310±1.80 5.052±3.48 11.363±4.88
ENSMUST00000170863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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