C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: carnitine O-acetyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000095321 CRAT 9606 - 9:129094810-129111189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318080 CRAT-006 129094810-129110804 protein_coding
  ENST00000393384 CRAT-004 129107334-129110711 protein_coding
  ENST00000415948 CRAT-007 129102442-129109276 nonsense_mediated_decay
  ENST00000441796 CRAT-005 129104197-129110769 nonsense_mediated_decay
  ENST00000455396 CRAT-010 129095206-129098371 protein_coding
  ENST00000455830 CRAT-012 129107814-129110672 protein_coding
  ENST00000458362 CRAT-002 129095397-129110782 nonsense_mediated_decay
  ENST00000464290 CRAT-003 129101907-129111189 processed_transcript
  ENST00000467343 CRAT-011 129095456-129098036 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318080ENST00000458362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318080 27.978±0.00 20.235±0.00 N/A 14.020±10.81 40.816±0.00 13.694±12.32 14.948±12.81 19.179±13.90 49.489±0.00 12.270±0.00 49.274±26.77 23.973±16.37 15.509±6.32 114.087±0.00
ENST00000458362 N/A N/A 2.232±0.00 3.696±0.00 1.342±0.00 3.545±0.00 2.989±0.00 10.717±0.00 3.087±0.00 0.967±0.00 7.477±0.00 5.789±0.00 11.458±0.00 80.991±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZA CIL_0005ZA_0001 CGP 9:129081100-129111189
CIL_0003C7 CIL_0003C7_0001 CGP 9:129094810-129148946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004092 IDA carnitine O-acetyltransferase activity
GO:0005102 IPI receptor binding
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005777 IDA peroxisome
GO:0005782 TAS peroxisomal matrix
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0008152 IEA metabolic process
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0019254 IDA carnitine metabolic process, CoA-linked
GO:0033540 TAS fatty acid beta-oxidation using acyl-CoA oxidase
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016545 CRAT (1 of 2) carnitine O-acetyltransferase protein_coding Danio_rerio
ENSDARG00000040248 crata carnitine O-acetyltransferase a protein_coding Danio_rerio
ENSMUSG00000026853 Crat carnitine acetyltransferase protein_coding Mus_musculus

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