C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: carnitine acetyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026853 Crat 10090 - 2:30400471-30415813 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028207 Crat-002 30401101-30415813 protein_coding
  ENSMUST00000102854 Crat-014 30402578-30415524 protein_coding
  ENSMUST00000102855 Crat-001 30400471-30415771 protein_coding
  ENSMUST00000128593 Crat-006 30414060-30415600 processed_transcript
  ENSMUST00000129494 Crat-005 30413162-30415333 protein_coding
  ENSMUST00000132981 Crat-008 30408070-30415308 protein_coding
  ENSMUST00000134120 Crat-012 30413141-30415518 protein_coding
  ENSMUST00000142096 Crat-013 30414595-30415407 protein_coding
  ENSMUST00000146603 Crat-003 30400476-30406679 processed_transcript
  ENSMUST00000146822 Crat-009 30413045-30414339 processed_transcript
  ENSMUST00000154595 Crat-007 30402637-30404961 protein_coding
  ENSMUST00000155790 Crat-010 30402498-30405288 protein_coding
  ENSMUST00000156702 Crat-004 30408115-30415548 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028207ENSMUST00000102854ENSMUST00000102855ENSMUST00000146603ENSMUST00000154595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028207 33.437±13.82 29.770±6.29 10.326±0.00 10.203±0.22 62.481±12.45 12.313±2.06 56.249±20.54 36.057±18.60 12.401±3.69 15.628±6.00 25.181±3.20 12.932±4.14 10.364±3.82 70.363±14.20
ENSMUST00000102854 N/A N/A N/A 20.093±0.00 62.319±12.91 N/A N/A N/A 8.137±2.33 N/A N/A 14.673±3.08 5.617±1.13 116.717±0.00
ENSMUST00000102855 N/A 22.702±13.16 N/A N/A N/A N/A N/A N/A 4.260±0.91 N/A N/A 3.805±0.00 1.373±0.30 12.950±0.00
ENSMUST00000146603 N/A 31.581±12.48 N/A N/A 55.118±0.88 12.083±1.81 N/A 18.493±0.00 6.335±1.05 9.471±1.91 N/A 8.018±0.70 N/A N/A
ENSMUST00000154595 N/A N/A N/A N/A 250.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AW CIL_0003AW_0002 CGP 2:30364233-30400529
CIL_0005ZA CIL_0005ZA_0002 CGP 2:30392254-30415813
CIL_0003C7 CIL_0003C7_0002 CGP 2:30400471-30447806

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004092 IEA carnitine O-acetyltransferase activity
GO:0005102 IEA receptor binding
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005777 IEA peroxisome
GO:0005783 IEA endoplasmic reticulum
GO:0006631 IEA fatty acid metabolic process
GO:0006810 IEA transport
GO:0008152 IEA metabolic process
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0019254 IEA carnitine metabolic process, CoA-linked

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016545 CRAT (1 of 2) carnitine O-acetyltransferase protein_coding Danio_rerio
ENSDARG00000040248 crata carnitine O-acetyltransferase a protein_coding Danio_rerio
ENSG00000095321 CRAT carnitine O-acetyltransferase protein_coding Homo_sapiens

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