C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 6C, cGMP-specific, cone, alpha prime
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000095464 PDE6C 9606 + 10:93612588-93666010 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371447 PDE6C-001 93612588-93666010 protein_coding
  ENST00000475427 PDE6C-002 93662056-93665673 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000371447ENST00000475427
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000371447 0.020±0.00 0.076±0.00 0.035±0.01 0.060±0.00 0.033±0.01 N/A 0.040±0.00 0.052±0.02 0.017±0.00 0.041±0.00
ENST00000475427 N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.309±0.00 0.038±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000102 CIL_000102_0001 CGP 10:93591687-93666010
CIL_000103 CIL_000103_0001 CGP 10:93612588-93702572

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0007603 IEA phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0030553 IEA cGMP binding
GO:0046549 IEA retinal cone cell development
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0050953 IEA sensory perception of light stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078461 pde6c phosphodiesterase 6C, cGMP-specific, cone, alpha prime protein_coding Danio_rerio
ENSMUSG00000024992 Pde6c phosphodiesterase 6C, cGMP specific, cone, alpha prime protein_coding Mus_musculus

Loading