C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 6C, cGMP specific, cone, alpha prime
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024992 Pde6c 10090 + 19:38132781-38183947 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025956 Pde6c-201 38132781-38183947 protein_coding
  ENSMUST00000112329 Pde6c-202 38132781-38183947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000025956ENSMUST00000112329
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000025956 N/A 0.008±0.00 N/A 0.563±0.31 0.062±0.02
ENSMUST00000112329 0.239±0.00 0.065±0.03 0.009±0.00 0.025±0.00 0.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000102 CIL_000102_0002 CGP 19:38116620-38183947
CIL_000103 CIL_000103_0002 CGP 19:38132781-38224138

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007601 IMP visual perception
GO:0007603 IMP phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0030553 IEA cGMP binding
GO:0046549 IMP retinal cone cell development
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0050953 IMP sensory perception of light stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078461 pde6c phosphodiesterase 6C, cGMP-specific, cone, alpha prime protein_coding Danio_rerio
ENSG00000095464 PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime protein_coding Homo_sapiens

Loading