C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane emp24 protein transport domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099203 TMED1 9606 - 19:10832438-10836318 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000214869 TMED1-001 10832438-10836290 protein_coding
  ENST00000586835 TMED1-004 10832687-10835004 protein_coding
  ENST00000588259 TMED1-005 10832975-10836201 nonsense_mediated_decay
  ENST00000588289 TMED1-003 10832985-10835632 protein_coding
  ENST00000589638 TMED1-007 10833051-10836195 protein_coding
  ENST00000591157 TMED1-002 10832985-10836249 nonsense_mediated_decay
  ENST00000591695 TMED1-006 10832813-10836318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverMuscleOvaryPlacentaTestisENST00000214869ENST00000586835
Transcript ID Breast Colon Liver Muscle Ovary Placenta Testis
ENST00000214869 17.711±0.00 13.202±0.00 19.163±0.00 5.319±0.00 31.684±0.90 44.928±11.41 19.827±0.00
ENST00000586835 N/A N/A N/A 10.529±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076W CIL_00076W_0002 CGP 19:10701430-10833488
CIL_000770 CIL_000770_0002 CGP 19:10718079-10836318
CIL_0002SD CIL_0002SD_0001 CGP 19:10832438-10869790

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017255 tmed1b transmembrane emp24 protein transport domain containing 1b protein_coding Danio_rerio
ENSDARG00000031325 tmed1a transmembrane emp24 protein transport domain containing 1a protein_coding Danio_rerio
ENSMUSG00000032180 Tmed1 transmembrane emp24 domain containing 1 protein_coding Mus_musculus

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