C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3a, subunit 1, 120kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099995 SF3A1 9606 - 22:30331988-30356947 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000215793 SF3A1-001 30331988-30356947 protein_coding
  ENST00000411423 SF3A1-004 30337801-30356884 nonsense_mediated_decay
  ENST00000444440 SF3A1-011 30337817-30341850 protein_coding
  ENST00000447376 SF3A1-009 30342320-30356919 nonsense_mediated_decay
  ENST00000463818 SF3A1-003 30346221-30356891 retained_intron
  ENST00000471037 SF3A1-006 30342547-30345154 retained_intron
  ENST00000471342 SF3A1-005 30344910-30346489 retained_intron
  ENST00000485618 SF3A1-008 30338840-30340471 retained_intron
  ENST00000496189 SF3A1-002 30352545-30356894 retained_intron
  ENST00000498259 SF3A1-007 30338961-30340779 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000215793ENST00000444440ENST00000471342ENST00000485618
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000215793 18.336±0.00 22.059±0.00 3.901±0.00 8.540±5.95 8.121±6.01 10.180±6.38 7.162±5.83 8.583±5.76 5.633±1.78 11.230±5.81 17.368±15.70 18.502±10.24 19.063±3.87 31.451±3.64
ENST00000444440 50.246±0.00 N/A N/A 42.513±0.00 41.249±0.00 42.798±0.00 N/A 37.169±0.00 N/A N/A 62.974±0.00 N/A N/A 122.232±0.00
ENST00000471342 N/A N/A N/A N/A N/A N/A N/A 23.373±0.00 N/A N/A 9.577±0.00 N/A N/A N/A
ENST00000485618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.055±0.00 74.274±0.00 65.567±0.00 155.460±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003723 IDA:IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005684 IDA U2-type spliceosomal complex
GO:0006396 IEA RNA processing
GO:0006397 IMP mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041887 sf3a1 splicing factor 3a, subunit 1 protein_coding Danio_rerio
ENSMUSG00000002129 Sf3a1 splicing factor 3a, subunit 1 protein_coding Mus_musculus

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