C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3a, subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002129 Sf3a1 10090 + 11:4160350-4182541 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002198 Sf3a1-003 4160350-4182541 protein_coding
  ENSMUST00000129583 Sf3a1-002 4160355-4173110 processed_transcript
  ENSMUST00000132666 Sf3a1-004 4160355-4171913 retained_intron
  ENSMUST00000133095 Sf3a1-001 4177548-4179419 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002198
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002198 8.878±4.60 23.515±1.56 10.594±2.16 17.106±8.19 12.534±8.75 13.622±6.63 6.325±0.62 9.378±1.35 6.953±3.62 14.804±2.60 3.093±0.32 24.274±8.08 11.510±5.97 8.395±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VN CIL_0003VN_0002 CGP 11:4141123-4182541

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005684 ISS U2-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041887 sf3a1 splicing factor 3a, subunit 1 protein_coding Danio_rerio
ENSG00000099995 SF3A1 splicing factor 3a, subunit 1, 120kDa protein_coding Homo_sapiens

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