C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3a, subunit 1, 120kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000215793 SF3A1-001 ENSG00000099995 9606 - 22:30331988-30356947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000215793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000215793 18.336±0.00 22.059±0.00 3.901±0.00 8.540±5.95 8.121±6.01 10.180±6.38 7.162±5.83 8.583±5.76 5.633±1.78 11.230±5.81 17.368±15.70 18.502±10.24 19.063±3.87 31.451±3.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003723 IDA:IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005684 IDA U2-type spliceosomal complex
GO:0006396 IEA RNA processing
GO:0006397 IMP mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002198 Sf3a1-003 protein_coding Mus_musculus 0 3208
ENSMUST00000132666 Sf3a1-004 retained_intron Mus_musculus 0 1035
ENSMUST00000133095 Sf3a1-001 retained_intron Mus_musculus 0 414
ENSMUST00000129583 Sf3a1-002 processed_transcript Mus_musculus 0 261

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