C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sperm antigen with calponin homology and coiled-coil domains 1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100014 SPECC1L 9606 + 22:24270817-24417740 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314328 SPECC1L-001 24270840-24417740 protein_coding
  ENST00000416735 SPECC1L-004 24270883-24324304 processed_transcript
  ENST00000421374 SPECC1L-002 24270822-24330401 protein_coding
  ENST00000437398 SPECC1L-201 24270817-24417739 protein_coding
  ENST00000440893 SPECC1L-003 24304396-24321688 protein_coding
  ENST00000472799 SPECC1L-005 24412160-24414752 retained_intron
  ENST00000541492 SPECC1L-006 24270883-24414773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314328ENST00000416735ENST00000421374ENST00000437398ENST00000541492
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314328 2.144±0.00 3.344±0.00 1.633±0.00 1.379±0.11 1.670±0.82 2.735±0.00 1.264±0.27 4.095±0.00 3.609±0.00 3.121±0.00 N/A 3.082±0.55 0.970±0.42 4.178±0.00
ENST00000416735 N/A N/A N/A N/A 9.589±0.00 N/A N/A N/A 12.573±0.00 N/A 3.562±0.00 N/A N/A N/A
ENST00000421374 N/A N/A 3.232±0.00 2.814±0.00 4.157±0.00 4.779±0.00 2.543±0.00 N/A 3.859±0.00 7.034±0.00 0.724±0.00 4.599±0.00 N/A N/A
ENST00000437398 5.603±0.00 N/A N/A 3.888±0.00 1.639±0.00 3.545±0.00 3.147±0.00 N/A N/A N/A 5.119±0.00 9.454±2.12 2.925±2.28 16.104±4.14
ENST00000541492 N/A N/A 2.523±0.00 4.056±0.00 2.169±0.00 3.210±0.00 1.541±0.19 N/A 3.794±0.00 4.446±0.00 N/A 2.968±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z1 CIL_0006Z1_0002 CGP 22:24270817-24442356

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005815 IEA microtubule organizing center
GO:0005921 IEA gap junction
GO:0007026 IEA negative regulation of microtubule depolymerization
GO:0007049 IEA cell cycle
GO:0015629 IEA actin cytoskeleton
GO:0015630 IEA microtubule cytoskeleton
GO:0016477 IEA cell migration
GO:0030036 IEA actin cytoskeleton organization
GO:0030835 IEA negative regulation of actin filament depolymerization
GO:0031941 IEA filamentous actin
GO:0046983 IEA protein dimerization activity
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006719 specc1la sperm antigen with calponin homology and coiled-coil domains 1-like a protein_coding Danio_rerio
ENSMUSG00000033444 Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like protein_coding Mus_musculus

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