C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAMM50 sorting and assembly machinery component
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100347 SAMM50 9606 + 22:43955421-44010531 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350028 SAMM50-001 43955421-43996533 protein_coding
  ENST00000465768 SAMM50-006 43990328-44010531 processed_transcript
  ENST00000474323 SAMM50-002 43974595-43996529 retained_intron
  ENST00000493161 SAMM50-004 43955442-43973322 processed_transcript
  ENST00000493621 SAMM50-005 43995391-43996376 processed_transcript
  ENST00000494795 SAMM50-003 43986344-43996529 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350028ENST00000494795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350028 49.819±0.00 26.449±0.00 6.735±0.00 16.758±7.36 28.650±25.08 16.485±5.91 17.879±11.24 15.180±8.89 12.638±5.86 7.021±2.04 31.697±12.77 24.047±9.51 17.847±1.01 28.397±4.04
ENST00000494795 N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A N/A N/A N/A 1.077±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HG CIL_0008HG_0001 VISTA 22:43702370-44303917
CIL_0004V1 CIL_0004V1_0001 CGP 22:43879678-43964488
CIL_0004UY CIL_0004UY_0001 CGP 22:43923739-44010531
CIL_0006F0 CIL_0006F0_0001 CGP 22:43955421-44172949

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001401 IMP mitochondrial sorting and assembly machinery complex
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005741 IDA mitochondrial outer membrane
GO:0005743 IEA mitochondrial inner membrane
GO:0006626 TAS protein targeting to mitochondrion
GO:0016021 IDA integral component of membrane
GO:0019867 IEA outer membrane
GO:0044267 TAS cellular protein metabolic process
GO:0045040 IDA protein import into mitochondrial outer membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039681 samm50l sorting and assembly machinery component 50 homolog, like protein_coding Danio_rerio
ENSDARG00000045814 samm50 sorting and assembly machinery component 50 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000022437 Samm50 sorting and assembly machinery component 50 homolog (S. cerevisiae) protein_coding Mus_musculus

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