C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAMM50 sorting and assembly machinery component
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350028 SAMM50-001 ENSG00000100347 9606 + 22:43955421-43996533 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350028
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350028 49.819±0.00 26.449±0.00 6.735±0.00 16.758±7.36 28.650±25.08 16.485±5.91 17.879±11.24 15.180±8.89 12.638±5.86 7.021±2.04 31.697±12.77 24.047±9.51 17.847±1.01 28.397±4.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HG CIL_0008HG_0001 VISTA 22:43702370-44303917
CIL_0004V1 CIL_0004V1_0001 CGP 22:43879678-43964488
CIL_0004UY CIL_0004UY_0001 CGP 22:43923739-44010531
CIL_0006F0 CIL_0006F0_0001 CGP 22:43955421-44172949

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001401 IMP mitochondrial sorting and assembly machinery complex
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005741 IDA mitochondrial outer membrane
GO:0005743 IEA mitochondrial inner membrane
GO:0006626 TAS protein targeting to mitochondrion
GO:0016021 IDA integral component of membrane
GO:0019867 IEA outer membrane
GO:0044267 TAS cellular protein metabolic process
GO:0045040 IDA protein import into mitochondrial outer membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023071 Samm50-201 protein_coding Mus_musculus 0 1469

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