C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004UY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100344-ENSG00000100347 CGP 9606 22:43923739-44010531
GeneTranscriptPositionBiotype
ENSG00000100344 (PNPLA3)
patatin-like phospholipase domain containing 3 		ENST00000216180 (PNPLA3-001) 43923739-43947568 protein_coding
ENST00000406117 (PNPLA3-005) 43923792-43964488 nonsense_mediated_decay
ENST00000423180 (PNPLA3-002) 43923803-43947061 protein_coding
ENST00000478713 (PNPLA3-003) 43924114-43933087 processed_transcript
ENST00000497129 (PNPLA3-004) 43933007-43939393 processed_transcript
ENSG00000100347 (SAMM50)
SAMM50 sorting and assembly machinery component 		ENST00000350028 (SAMM50-001) 43955421-43996533 protein_coding
ENST00000465768 (SAMM50-006) 43990328-44010531 processed_transcript
ENST00000474323 (SAMM50-002) 43974595-43996529 retained_intron
ENST00000493161 (SAMM50-004) 43955442-43973322 processed_transcript
ENST00000493621 (SAMM50-005) 43995391-43996376 processed_transcript
ENST00000494795 (SAMM50-003) 43986344-43996529 retained_intron
ENSG00000188677 (PARVB)
parvin, beta 		ENST00000338758 (PARVB-002) 44024277-44172949 protein_coding
ENST00000402876 (PARVB-006) 44024302-44119934 processed_transcript
ENST00000404989 (PARVB-003) 44069061-44169184 protein_coding
ENST00000406477 (PARVB-001) 43999211-44168923 protein_coding
ENST00000444029 (PARVB-004) 44031365-44132965 protein_coding
ENST00000477438 (PARVB-009) 44168179-44168927 processed_transcript
ENST00000477795 (PARVB-005) 44086684-44100089 processed_transcript
ENST00000484345 (PARVB-008) 44162734-44168243 processed_transcript
ENST00000495824 (PARVB-007) 44136464-44139124 processed_transcript
ENST00000619710 (PARVB-201) 44026304-44169221 protein_coding
ENSG00000224856 (RP4-796I17.5)
 ENST00000430869 (RP4-796I17.5-001) 43957027-43957348 processed_pseudogene
CIL_0004UY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041653-ENSMUSG00000022437 CGP 10090 15:84167816-84214303
GeneTranscriptPositionBiotype
ENSMUSG00000022437 (Samm50)
sorting and assembly machinery component 50 homolog (S. cerevisiae) 		ENSMUST00000023071 (Samm50-201) 84192233-84214303 protein_coding
ENSMUSG00000041653 (Pnpla3)
patatin-like phospholipase domain containing 3 		ENSMUST00000045289 (Pnpla3-201) 84167816-84189512 protein_coding
ENSMUSG00000098882 (Mir6392)
microRNA 6392 		ENSMUST00000184924 (Mir6392-201) 84168270-84168377 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004UY_0001ENSG00000100344ENST00000216180ENST00000406117ENST00000423180ENST00000478713ENST00000497129ENSG00000100347ENST00000350028ENST00000465768ENST00000474323ENST00000493161ENST00000493621ENST00000494795ENSG00000188677ENST00000338758ENST00000402876ENST00000404989ENST00000406477ENST00000444029ENST00000477438ENST00000477795ENST00000484345ENST00000495824ENST00000619710ENSG00000224856ENST00000430869CIL_0004UY_0002ENSMUSG00000022437ENSMUST00000023071ENSMUSG00000041653ENSMUST00000045289ENSMUSG00000098882ENSMUST00000184924
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004UY_0001ENSG00000100344ENST00000216180ENSG00000100347ENST00000350028ENST00000494795ENSG00000188677ENST00000338758ENST00000402876ENST00000404989ENST00000406477ENST00000619710ENSG00000224856ENST00000430869CIL_0004UY_0002ENSMUSG00000022437ENSMUST00000023071ENSMUSG00000041653ENSMUST00000045289ENSMUSG00000098882ENSMUST00000184924
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100344 ENST00000216180 N/A N/A N/A N/A N/A N/A N/A 1.837±0.00 8.128±0.00 N/A N/A N/A N/A N/A
ENST00000406117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100347 ENST00000350028 49.819±0.00 26.449±0.00 6.735±0.00 16.758±7.36 28.650±25.08 16.485±5.91 17.879±11.24 15.180±8.89 12.638±5.86 7.021±2.04 31.697±12.77 24.047±9.51 17.847±1.01 28.397±4.04
ENST00000465768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494795 N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A N/A N/A N/A 1.077±0.00 N/A N/A
ENSG00000188677 ENST00000338758 4.224±0.00 5.411±0.00 0.240±0.00 3.072±1.45 3.410±0.00 1.699±1.54 7.240±6.07 N/A 0.589±0.13 1.572±0.00 23.967±0.00 2.755±1.36 1.892±0.56 1.640±0.86
ENST00000402876 N/A N/A 0.688±0.00 N/A 2.423±0.00 N/A N/A N/A N/A N/A 18.284±0.00 4.690±0.00 N/A N/A
ENST00000404989 25.208±0.00 27.840±0.00 0.688±0.00 5.402±2.68 11.119±9.96 9.466±8.48 25.997±0.00 10.565±0.00 2.874±0.20 10.819±9.15 29.623±23.38 18.814±12.82 22.385±4.39 6.562±1.08
ENST00000406477 N/A N/A N/A N/A N/A 0.714±0.00 N/A N/A 1.477±0.00 N/A N/A 1.342±0.00 N/A N/A
ENST00000444029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619710 N/A N/A N/A 1.574±0.00 2.374±0.00 N/A 4.655±0.00 0.730±0.00 N/A 8.192±0.00 16.144±0.00 3.017±0.00 N/A 3.605±0.00
ENSG00000224856 ENST00000430869 0.097±0.00 0.249±0.00 N/A 0.052±0.00 N/A 0.234±0.00 N/A 0.050±0.00 N/A 0.092±0.00 0.087±0.00 N/A N/A 0.270±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022437 ENSMUST00000023071 12.712±2.14 18.357±3.75 11.359±0.78 19.133±14.18 9.583±2.44 18.539±2.63 23.853±4.97 25.545±3.00 15.598±3.23 10.813±1.13 72.491±12.74 16.726±18.81 49.539±23.63 6.635±0.82
ENSMUSG00000041653 ENSMUST00000045289 166.068±108.03 47.244±10.82 2.143±0.01 1.236±0.73 79.425±12.19 0.841±0.15 2.885±1.95 2.396±0.45 2.843±3.17 3.081±0.79 1.602±1.79 6.313±3.75 2.433±3.49 0.171±0.10
ENSMUSG00000098882 ENSMUST00000184924 7958.577±2575.91 2412.437±1014.91 N/A N/A 5902.120±2698.18 1610.020±0.00 2298.150±0.00 N/A 30.490±0.00 N/A N/A N/A N/A N/A

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