C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 27
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100360 IFT27 9606 - 22:36758202-36776256 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340630 IFT27-001 36758202-36776153 protein_coding
  ENST00000415653 IFT27-008 36758211-36767819 nonsense_mediated_decay
  ENST00000417951 IFT27-002 36762933-36776103 protein_coding
  ENST00000430701 IFT27-005 36763919-36776125 protein_coding
  ENST00000433985 IFT27-201 36758203-36776133 protein_coding
  ENST00000440696 IFT27-003 36763996-36768554 protein_coding
  ENST00000465023 IFT27-004 36767063-36775699 retained_intron
  ENST00000471809 IFT27-011 36758211-36776125 retained_intron
  ENST00000474616 IFT27-010 36758211-36761102 processed_transcript
  ENST00000476548 IFT27-007 36772403-36776256 processed_transcript
  ENST00000495555 IFT27-006 36758211-36766454 retained_intron
  ENST00000495987 IFT27-009 36758211-36760907 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417951ENST00000430701ENST00000433985ENST00000465023ENST00000471809ENST00000495555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.338±0.00 N/A N/A
ENST00000430701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.443±0.00 11.160±0.00 28.733±0.00
ENST00000433985 3.760±0.00 4.573±0.00 N/A 6.559±1.98 4.784±3.63 5.166±4.44 5.270±4.49 7.437±6.12 8.077±0.00 12.218±0.00 2.240±1.38 11.186±7.63 7.984±3.20 10.134±5.03
ENST00000465023 N/A N/A 2.455±0.00 N/A N/A N/A 0.862±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000471809 N/A 0.855±0.00 0.321±0.00 0.722±0.47 0.757±0.00 0.213±0.09 0.221±0.07 0.274±0.20 0.134±0.00 0.561±0.00 0.089±0.00 0.759±0.32 0.308±0.10 1.486±0.73
ENST00000495555 N/A N/A N/A N/A N/A 1.001±0.00 N/A N/A N/A 2.025±0.00 N/A 0.725±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006F7 CIL_0006F7_0002 CGP 22:36563921-36776256
CIL_0005SS CIL_0005SS_0001 CGP 22:36758202-36819479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005813 IEA centrosome
GO:0005929 IEA cilium
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030992 ISS intraciliary transport particle B
GO:0031514 ISS motile cilium
GO:0097225 IEA sperm midpiece
GO:0097228 IEA sperm principal piece

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036612 ift27 intraflagellar transport 27 homolog (Chlamydomonas) protein_coding Danio_rerio
ENSMUSG00000016637 Ift27 intraflagellar transport 27 protein_coding Mus_musculus

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