C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromogranin A (parathyroid secretory protein 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100604 CHGA 9606 + 14:92923080-92935293 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216492 CHGA-001 92923080-92935293 protein_coding
  ENST00000334654 CHGA-003 92923176-92935253 protein_coding
  ENST00000553866 CHGA-005 92923363-92932268 processed_transcript
  ENST00000556076 CHGA-004 92923157-92931681 nonsense_mediated_decay
  ENST00000556098 CHGA-006 92926101-92927589 retained_intron
  ENST00000556876 CHGA-007 92931677-92933255 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216492ENST00000334654ENST00000553866ENST00000556076ENST00000556098ENST00000556876
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216492 0.291±0.00 N/A 66.531±48.55 0.045±0.00 7.437±0.00 N/A N/A N/A N/A N/A 1.164±0.40 0.078±0.01 35.035±21.03
ENST00000334654 N/A N/A 30.426±26.23 0.119±0.01 3.568±0.47 N/A 0.175±0.00 N/A 0.379±0.00 0.106±0.00 0.564±0.15 N/A 16.269±10.56
ENST00000553866 N/A N/A N/A N/A N/A N/A N/A N/A 0.388±0.00 N/A N/A 0.158±0.00 N/A
ENST00000556076 N/A N/A N/A 0.143±0.00 N/A 0.065±0.00 N/A 0.113±0.00 N/A 0.065±0.00 N/A N/A N/A
ENST00000556098 N/A 0.180±0.00 N/A 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556876 N/A 0.115±0.00 N/A N/A N/A 0.071±0.00 N/A 0.065±0.00 N/A N/A 0.330±0.00 0.109±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000534 CIL_000534_0001 CGP 14:92794231-92935293
CIL_000659 CIL_000659_0002 CGP 14:92923080-93116320

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0008217 TAS regulation of blood pressure
GO:0016020 IEA membrane
GO:0030141 IEA secretory granule
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008829 chga chromogranin A protein_coding Danio_rerio
ENSMUSG00000021194 Chga chromogranin A protein_coding Mus_musculus

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