C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vaccinia related kinase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100749 VRK1 9606 + 14:96797304-96931722 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216639 VRK1-001 96797304-96881613 protein_coding
  ENST00000553683 VRK1-005 96876029-96881259 protein_coding
  ENST00000555067 VRK1-004 96858909-96881391 processed_transcript
  ENST00000555351 VRK1-002 96797385-96853055 retained_intron
  ENST00000555402 VRK1-007 96877390-96881407 processed_transcript
  ENST00000557222 VRK1-003 96852888-96931722 protein_coding
  ENST00000557352 VRK1-006 96855304-96860922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216639ENST00000555067ENST00000555351ENST00000557222
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216639 2.672±0.00 5.314±0.00 3.687±0.42 2.905±0.00 1.962±0.79 0.848±0.57 2.384±0.00 1.482±0.77 1.460±0.74 0.953±0.00 3.482±0.86 2.902±0.07 11.652±3.78
ENST00000555067 N/A 2.898±0.00 N/A 2.827±0.00 N/A N/A 1.084±0.00 N/A N/A N/A 7.482±0.00 4.805±0.00 15.487±0.00
ENST00000555351 N/A N/A N/A N/A N/A N/A 0.350±0.00 N/A N/A 0.316±0.00 N/A N/A N/A
ENST00000557222 N/A N/A 1.324±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HJ CIL_0003HJ_0001 CGP 14:96501433-96931722
CIL_0007JE CIL_0007JE_0001 UCNEbase 14:96566849-97634970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0004672 IDA:IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005795 IDA Golgi stack
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0006468 IDA:IEA protein phosphorylation
GO:0007067 IEA mitotic nuclear division
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0007084 TAS mitotic nuclear envelope reassembly
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0031493 IPI nucleosomal histone binding
GO:0035175 IDA histone kinase activity (H3-S10 specific)
GO:0043987 IDA histone H3-S10 phosphorylation
GO:0046777 IDA protein autophosphorylation
GO:0072354 IDA histone kinase activity (H3-T3 specific)
GO:0072355 IDA histone H3-T3 phosphorylation
GO:0090166 IDA Golgi disassembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018006 vrk1 vaccinia related kinase 1 protein_coding Danio_rerio
ENSMUSG00000021115 Vrk1 vaccinia related kinase 1 protein_coding Mus_musculus

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