C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003HJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000090060-ENSG00000100749 CGP 9606 14:96501433-96931722
GeneTranscriptPositionBiotype
ENSG00000090060 (PAPOLA)
poly(A) polymerase alpha 		ENST00000216277 (PAPOLA-001) 96502373-96567111 protein_coding
ENST00000392990 (PAPOLA-005) 96502558-96565428 protein_coding
ENST00000553357 (PAPOLA-011) 96502382-96532338 nonsense_mediated_decay
ENST00000553461 (PAPOLA-025) 96527442-96534889 protein_coding
ENST00000553689 (PAPOLA-003) 96502398-96565048 nonsense_mediated_decay
ENST00000553940 (PAPOLA-021) 96560438-96565059 retained_intron
ENST00000554130 (PAPOLA-012) 96502412-96531728 processed_transcript
ENST00000554135 (PAPOLA-019) 96547688-96552983 retained_intron
ENST00000554666 (PAPOLA-026) 96536895-96547904 retained_intron
ENST00000554887 (PAPOLA-010) 96501433-96527496 processed_transcript
ENST00000555021 (PAPOLA-016) 96535525-96537047 retained_intron
ENST00000555131 (PAPOLA-015) 96534223-96537059 retained_intron
ENST00000555224 (PAPOLA-024) 96521063-96532696 retained_intron
ENST00000555508 (PAPOLA-022) 96562458-96565106 retained_intron
ENST00000555626 (PAPOLA-006) 96502851-96564988 protein_coding
ENST00000555701 (PAPOLA-009) 96542182-96553532 retained_intron
ENST00000555912 (PAPOLA-007) 96525981-96531725 retained_intron
ENST00000556248 (PAPOLA-014) 96504289-96521072 processed_transcript
ENST00000556283 (PAPOLA-018) 96542729-96555950 retained_intron
ENST00000556459 (PAPOLA-020) 96547896-96565407 protein_coding
ENST00000556619 (PAPOLA-013) 96502542-96528002 protein_coding
ENST00000556787 (PAPOLA-017) 96541907-96552543 retained_intron
ENST00000557320 (PAPOLA-002) 96502401-96534885 protein_coding
ENST00000557406 (PAPOLA-023) 96521016-96531731 retained_intron
ENST00000557471 (PAPOLA-004) 96502441-96532248 protein_coding
ENSG00000100749 (VRK1)
vaccinia related kinase 1 		ENST00000216639 (VRK1-001) 96797304-96881613 protein_coding
ENST00000553683 (VRK1-005) 96876029-96881259 protein_coding
ENST00000555067 (VRK1-004) 96858909-96881391 processed_transcript
ENST00000555351 (VRK1-002) 96797385-96853055 retained_intron
ENST00000555402 (VRK1-007) 96877390-96881407 processed_transcript
ENST00000557222 (VRK1-003) 96852888-96931722 protein_coding
ENST00000557352 (VRK1-006) 96855304-96860922 protein_coding
ENSG00000223299 (RN7SKP108)
RNA, 7SK small nuclear pseudogene 108 		ENST00000411367 (RN7SKP108-201) 96638187-96638514 misc_RNA
ENSG00000258702 (RP11-433J8.1)
 ENST00000553378 (RP11-433J8.1-002) 96592733-96595762 lincRNA
ENST00000555496 (RP11-433J8.1-001) 96592768-96594760 lincRNA
ENSG00000258979 (RP11-433J8.2)
 ENST00000556669 (RP11-433J8.2-001) 96741191-96790613 lincRNA
ENSG00000276182 (RP11-872J21.5)
 ENST00000618976 (RP11-872J21.5-001) 96537170-96537904 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0003HJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021111-ENSMUSG00000021115 CGP 10090 12:105784694-106077410
GeneTranscriptPositionBiotype
ENSMUSG00000021115 (Vrk1)
vaccinia related kinase 1 		ENSMUST00000021539 (Vrk1-201) 106010263-106077410 protein_coding
ENSMUST00000072040 (Vrk1-202) 106010263-106077410 protein_coding
ENSMUST00000085026 (Vrk1-203) 106010263-106077410 protein_coding

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HJ_0001ENSG00000090060ENST00000216277ENST00000392990ENST00000553357ENST00000553461ENST00000553689ENST00000553940ENST00000554130ENST00000554135ENST00000554666ENST00000554887ENST00000555021ENST00000555131ENST00000555224ENST00000555508ENST00000555626ENST00000555701ENST00000555912ENST00000556248ENST00000556283ENST00000556459ENST00000556619ENST00000556787ENST00000557320ENST00000557406ENST00000557471ENSG00000100749ENST00000216639ENST00000553683ENST00000555067ENST00000555351ENST00000555402ENST00000557222ENST00000557352ENSG00000223299ENST00000411367ENSG00000258702ENST00000553378ENST00000555496ENSG00000258979ENST00000556669ENSG00000276182ENST00000618976CIL_0003HJ_0002ENSMUSG00000021115ENSMUST00000021539ENSMUST00000072040ENSMUST00000085026
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HJ_0001ENSG00000090060ENST00000216277ENST00000554130ENST00000554887ENST00000557320ENSG00000100749ENST00000216639ENST00000555067ENST00000555351ENST00000557222ENSG00000223299ENST00000411367ENSG00000258702ENST00000553378ENST00000555496ENSG00000258979ENST00000556669ENSG00000276182ENST00000618976CIL_0003HJ_0002ENSMUSG00000021115ENSMUST00000021539ENSMUST00000072040ENSMUST00000085026
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090060 ENST00000216277 20.531±0.00 18.137±0.00 3.182±0.00 5.956±0.00 13.355±2.89 18.145±12.79 11.530±7.85 11.066±3.94 11.549±0.66 9.829±5.43 11.517±0.00 19.003±8.73 15.807±1.15 27.001±10.64
ENST00000392990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.644±0.00 49.591±0.00 92.679±0.00
ENST00000554135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.502±0.00 45.019±0.00 86.347±0.00
ENST00000555021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557320 N/A N/A 3.073±0.00 7.358±0.85 7.814±0.00 6.279±0.00 3.186±0.00 N/A N/A 7.994±2.02 2.216±0.00 6.017±0.00 N/A N/A
ENST00000557406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100749 ENST00000216639 2.672±0.00 5.314±0.00 N/A 3.687±0.42 2.905±0.00 1.962±0.79 0.848±0.57 2.384±0.00 1.482±0.77 1.460±0.74 0.953±0.00 3.482±0.86 2.902±0.07 11.652±3.78
ENST00000553683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555067 N/A 2.898±0.00 N/A N/A 2.827±0.00 N/A N/A 1.084±0.00 N/A N/A N/A 7.482±0.00 4.805±0.00 15.487±0.00
ENST00000555351 N/A N/A N/A N/A N/A N/A N/A 0.350±0.00 N/A N/A 0.316±0.00 N/A N/A N/A
ENST00000555402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557222 N/A N/A N/A 1.324±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223299 ENST00000411367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00
ENSG00000258702 ENST00000553378 0.010±0.00 0.106±0.00 N/A N/A 0.049±0.04 0.022±0.02 0.045±0.00 0.018±0.00 0.065±0.04 0.039±0.01 0.009±0.00 0.058±0.02 0.019±0.00 0.049±0.00
ENST00000555496 N/A N/A N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.103±0.00 N/A N/A
ENSG00000258979 ENST00000556669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.334±0.17
ENSG00000276182 ENST00000618976 0.162±0.00 0.449±0.00 2.556±0.00 1.575±0.67 1.005±0.56 2.909±1.87 0.775±0.17 1.401±0.63 1.179±0.74 4.606±4.07 0.348±0.00 0.952±0.87 0.153±0.13 0.981±0.26
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021115 ENSMUST00000021539 N/A N/A N/A N/A 0.692±0.30 0.405±0.00 N/A 0.418±0.06 0.192±0.02 N/A 0.153±0.03 1.754±0.63 1.364±0.00 1.567±0.32
ENSMUST00000072040 1.392±0.94 1.250±0.26 1.278±0.25 2.788±1.61 1.232±0.56 1.483±0.24 0.499±0.13 0.718±0.34 3.370±2.48 1.860±0.84 0.335±0.09 2.321±1.08 3.625±1.99 N/A
ENSMUST00000085026 0.536±0.10 0.985±0.49 0.571±0.09 2.823±0.30 0.647±0.00 N/A 0.472±0.09 0.376±0.09 1.215±0.98 0.615±0.00 0.308±0.13 1.683±0.66 2.413±1.50 1.133±0.36

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