C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vaccinia related kinase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021115 Vrk1 10090 + 12:106010263-106077410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021539 Vrk1-201 106010263-106077410 protein_coding
  ENSMUST00000072040 Vrk1-202 106010263-106077410 protein_coding
  ENSMUST00000085026 Vrk1-203 106010263-106077410 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021539ENSMUST00000072040ENSMUST00000085026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021539 N/A N/A N/A N/A 0.692±0.30 0.405±0.00 N/A 0.418±0.06 0.192±0.02 N/A 0.153±0.03 1.754±0.63 1.364±0.00 1.567±0.32
ENSMUST00000072040 1.392±0.94 1.250±0.26 1.278±0.25 2.788±1.61 1.232±0.56 1.483±0.24 0.499±0.13 0.718±0.34 3.370±2.48 1.860±0.84 0.335±0.09 2.321±1.08 3.625±1.99 N/A
ENSMUST00000085026 0.536±0.10 0.985±0.49 0.571±0.09 2.823±0.30 0.647±0.00 N/A 0.472±0.09 0.376±0.09 1.215±0.98 0.615±0.00 0.308±0.13 1.683±0.66 2.413±1.50 1.133±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HJ CIL_0003HJ_0002 CGP 12:105784694-106077410
CIL_0007JE CIL_0007JE_0002 UCNEbase 12:105838681-106687937

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004674 IDA protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005795 ISS Golgi stack
GO:0005856 IEA cytoskeleton
GO:0006468 IDA protein phosphorylation
GO:0007067 IEA mitotic nuclear division
GO:0031493 IEA nucleosomal histone binding
GO:0035175 IEA histone kinase activity (H3-S10 specific)
GO:0043987 IEA histone H3-S10 phosphorylation
GO:0046777 IDA protein autophosphorylation
GO:0072354 IEA histone kinase activity (H3-T3 specific)
GO:0072355 IEA histone H3-T3 phosphorylation
GO:0090166 ISS Golgi disassembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018006 vrk1 vaccinia related kinase 1 protein_coding Danio_rerio
ENSG00000100749 VRK1 vaccinia related kinase 1 protein_coding Homo_sapiens

Loading