C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YY1 transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100811 YY1 9606 + 14:100238298-100282792 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262238 YY1-001 100238985-100282792 protein_coding
  ENST00000553625 YY1-003 100239754-100276578 protein_coding
  ENST00000554371 YY1-006 100238298-100239346 protein_coding
  ENST00000554579 YY1-005 100276199-100277793 retained_intron
  ENST00000554804 YY1-004 100239759-100278142 protein_coding
  ENST00000623799 YY1-002 100275729-100278470 TEC

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262238ENST00000554804ENST00000623799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262238 12.099±0.00 14.873±0.00 3.316±0.00 9.242±4.26 9.954±3.80 10.465±6.32 4.940±3.55 11.688±7.49 6.173±0.79 11.681±6.02 6.176±4.40 10.154±3.80 9.524±0.95 10.843±2.63
ENST00000554804 N/A N/A N/A N/A N/A N/A 5.584±4.18 N/A 6.933±0.00 N/A 13.173±0.00 9.302±0.00 11.762±1.67 15.980±1.98
ENST00000623799 N/A N/A N/A N/A N/A 2.447±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032R CIL_00032R_0001 CGP 14:100143957-100282792
CIL_0004AD CIL_0004AD_0001 CGP 14:100238298-100306547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000400 IDA four-way junction DNA binding
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0001078 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0003714 TAS transcription corepressor activity
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006403 IEA RNA localization
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007283 IEA spermatogenesis
GO:0008270 TAS zinc ion binding
GO:0009952 IEA anterior/posterior pattern specification
GO:0010225 IMP response to UV-C
GO:0010628 IEA positive regulation of gene expression
GO:0030154 IEA cell differentiation
GO:0031011 IDA Ino80 complex
GO:0031519 IEA PcG protein complex
GO:0034644 IMP cellular response to UV
GO:0034696 IEA response to prostaglandin F
GO:0044212 IDA transcription regulatory region DNA binding
GO:0046872 IEA metal ion binding
GO:0048593 IEA camera-type eye morphogenesis
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027978 yy1b YY1 transcription factor b protein_coding Danio_rerio
ENSDARG00000042796 yy1a YY1 transcription factor a protein_coding Danio_rerio
ENSMUSG00000021264 Yy1 YY1 transcription factor protein_coding Mus_musculus

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